Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq326 116 3e-21
>seq326
Length=20000
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| ||||| ||| |||||||| |||||||| ||||| |||
Sbjct 12530 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 12589
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| || | ||||| ||||| || || ||| | || |||| ||||||||| |||
Sbjct 12590 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 12649
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| ||||| || || | ||| ||||| | || |
Sbjct 12650 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACT 12709
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || || |||||||| || || || ||||| || || |||||
Sbjct 12710 TCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||| || | ||| || | || | || |||||||| || ||||| ||||| ||
Sbjct 13059 CCACCTCGGAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 13118
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | ||||||| ||||| || || || | || || | ||||||||| |||
Sbjct 13119 AGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGG 13178
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || ||||| || ||||| || || | | | | |||||| | |||
Sbjct 13179 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACC 13238
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||||||||||||||||| | || ||||| || ||||||||
Sbjct 13239 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 13285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422071551046508
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |