Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq26 168 7e-37 seq433 120 3e-22 seq326 120 3e-22 seq31 114 1e-20 >seq26 Length=47302 Score = 168 bits (186), Expect = 7e-37 Identities = 180/235 (77%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || |||||| | || || || | Sbjct 12199 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 12140 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| |||||| || || | ||||| |||||||| ||| |||| Sbjct 12139 TCCGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 12081 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||||||| |||| || || || ||||| || || | |||||||| |||||| Sbjct 12080 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGTGCGACTA 12021 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||| ||| |||||| | ||| ||||| || | ||||| ||| Sbjct 12020 CAACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTGCGCCTGCGTGGCGGTGGC 11966 >seq433 Length=16792 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 5057 TTCGTTAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 4998 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | |||||| ||||| | ||||| |||||||| ||| | |||||||| ||| | Sbjct 4997 GACAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 4938 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| |||||| Sbjct 4937 ATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTGCGACTACAACATTCAGAAG 4878 Query 40879 G 40879 | Sbjct 4877 G 4877 >seq326 Length=20000 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||| || |||| ||||| | | Sbjct 13285 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 13226 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| || || ||||| |||||| | |||||| Sbjct 13225 GATACCATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCCCCCGACCAG 13166 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 13165 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGCACTCTTGCTGACTACAAC 13106 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 13105 ATCCAGAAGGAGTCAACCCTTCACCTCGT 13077 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || |||||| | || |||||| | | Sbjct 12528 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTGCT 12469 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | || |||| || |||| || || ||||| ||||| | |||||| Sbjct 12468 GATACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 12409 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| || | || || || ||||| || |||| ||||| || | |||||||||| Sbjct 12408 CAACGACTTATTTTTGCCGGAAAGCAGCTAGAAGACGGCCGCACGCTGAGCGACTACAAC 12349 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| || ||||||| ||| Sbjct 12348 ATCCAGAAGGAAAGTACTTTGCATCTCGTG 12319 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | || |||||| | | Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| ||||| || ||||| ||| | |||||| Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 12637 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || || || ||||| || || | || || | |||||||||| Sbjct 12636 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAAC 12577 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| | || |||||| | || |||| || |||| || Sbjct 12576 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 12530 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| | || ||||| || |||||| | | | | |||| Sbjct 12960 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAATCG 12901 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| || || || || || || | || ||||| ||| | |||| ||| || || Sbjct 12900 AAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATCTTCGCTGGTAAG 12841 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || | || |||||| ||||||||| ||||||||||| |||| || || Sbjct 12840 CAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGGAATCCACTCTTCAC 12781 Query 40894 CTAGT 40898 || || Sbjct 12780 CTTGT 12776 >seq31 Length=45476 Score = 114 bits (126), Expect = 1e-20 Identities = 226/329 (69%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||| | | ||||| ||||||| ||||| || || |||||| ||||||| || || Sbjct 39635 CTTTGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTT 39694 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 ||| | || || ||||||||||| || || || ||||| || || || ||| ||||| Sbjct 39695 TGCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGA 39754 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 || |||||| | || |||||| |||| |||||||||||| || || | |||| | Sbjct 39755 ACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCT 39814 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 ||| ||| | ||| | || ||| || |||||||||| || | ||| || Sbjct 39815 CAAGCACCGAGCCAGCAAGCAAGTTATCCAGGATATTATCACCGACGCTGTTGGCATTGA 39874 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC-G 117325 ||| || | ||||| || || ||| |||| ||| || || | || || | || Sbjct 39875 GCAAGAGTTTTTGACCGAGGCTCTTCCGTGTGC-TCTCCTAGGCATGAA-CGCCACACTA 39932 Query 117326 ATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||| |||||| || || || |||||||| Sbjct 39933 ATGAAGCAATATATTGAATTTGTCGCCGA 39961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514984369528880