Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq31 82.4 7e-11 >seq31 Length=45476 Score = 82.4 bits (90), Expect = 7e-11 Identities = 175/259 (68%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||| ||||||||||||||||| ||||| || ||||| ||||| | ||| || | | Sbjct 39441 TTTCAGAATGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 39382 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 || || || | || | || | |||||| || || || || || ||| | Sbjct 39381 CCTGAACCTCGCCGCTGAAACGCTCAAGAAGGTTTTCATTGACAATGCCGTCAGAAGCAG 39322 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT--TATCTGA-AAGTTTTAACC 16709 |||| || || | |||||| ||| || | ||| |||| | || | | | || || Sbjct 39321 CAAAGAATGCCAAAATGTGTGAAATGAAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCC 39262 Query 16710 AGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | || || ||||| || | ||||| |||||| | ||||| ||||| || |||||| Sbjct 39261 AATCGTGCAAGTCTTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCAGCCT 39202 Query 16770 TTTTATACATTTTCCATAT 16788 | || ||||||| ||| || Sbjct 39201 TCTTGTACATTTGCCAGAT 39183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301192811800