Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq752 122 2e-22 >seq752 Length=11106 Score = 122 bits (134), Expect = 2e-22 Identities = 428/665 (64%), Gaps = 15/665 (2%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||||| || ||| || | || | | ||||| ||||| || Sbjct 5634 CTTGACTCCGCTATTGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTCAAGACT 5575 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||||| ||| ||||| |||||| | | |||||||| || || ||| ||||||||| Sbjct 5574 CTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATTGTCGAGCGACCCCAGCACATG 5515 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || || ||||| ||| || | || ||| |||| | ||||| ||| Sbjct 5514 ATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAATATTGAGCGCGTTTTGGAGACCTAC 5455 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | | || | || || ||| |||| || ||||||||||| ||| Sbjct 5454 CACCTCATGTCCAGCAAGCTCT---TCACCCACGCCTCACCTACACTCTTCAACGCTGGT 5398 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 ||| | | ||||||| || || || || | | |||| | |||||| | || Sbjct 5397 ACCCCCCAGTGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGCATTGAT 5338 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 ||||| || ||||| || | |||| || | ||| || || | || || |||||| Sbjct 5337 GGCATCTACGACACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGAATC 5281 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || | |||| | |||||| || | || || ||||| || || || || Sbjct 5280 GGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACGGTACA 5221 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | || ||| | ||| | ||||| ||| | ||| ||||| | | | ||||| Sbjct 5220 TCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCAG 5161 Query 249256 GCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | ||| | ||| || | || ||||| || | || |||||||| || | Sbjct 5160 GGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTG 5101 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || || || || ||| ||||||| |||| || || | | || || |||||| Sbjct 5100 TTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAATCGTGCTCGCGACCTC 5041 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||| | |||||| || | || | |||||| |||||| | |||| |||||| Sbjct 5040 TTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAACGGGGATTGG 4981 Query 249433 ACGCT 249437 || || Sbjct 4980 ACCCT 4976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073264755464384