Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq752 333 2e-86 seq29927 116 3e-21 seq326 98.7 9e-16 seq433 91.5 1e-13 >seq752 Length=11106 Score = 333 bits (368), Expect = 2e-86 Identities = 599/873 (69%), Gaps = 2/873 (0%) Strand=Plus/Plus Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || || |||| || |||||||||| |||| ||||| | ||||||||| ||||| | Sbjct 4757 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 4816 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || ||||||| ||| ||| ||||||| ||| | ||| | |||| || ||| | Sbjct 4817 GGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 4876 Query 23222 CGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280 ||| || | | ||| || ||| ||||||| ||| | || |||||||| | || Sbjct 4877 -GTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCC 4935 Query 23281 GTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT 23340 || || || |||||||| || | | | ||||||||||| |||| || || Sbjct 4936 ATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTT 4995 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| ||||| |||| || ||||| || ||||| ||||| ||| || ||||| || || Sbjct 4996 TTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACG 5055 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || || ||| ||||||| |||||| | |||||| |||||||| || ||||| Sbjct 5056 ATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCA 5115 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||||||||| | |||||| || || |||| ||| || |||||||| || ||||| | Sbjct 5116 AGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCT 5175 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| | || | ||||| || | || |||||||| | ||| ||| Sbjct 5176 GGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCC 5235 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | || || | || || | | ||| |||| || || || || || || Sbjct 5236 GGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCAT 5295 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || || ||||||||||||||||| || |||||||| || || Sbjct 5296 CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTT 5355 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||| | |||||| ||||||| || | ||| ||| | || ||| ||||| Sbjct 5356 CATGTCGACTAGGAAACAGGAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGT 5415 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || |||||| || ||| | ||||| || | ||| || || | || || Sbjct 5416 AGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTC 5475 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||| | ||||| ||||||| || |||||||| ||||||| || |||| |||||| Sbjct 5476 AATATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGAC 5535 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | |||||| | ||||| |||||||| | | || || || || ||||| || | Sbjct 5536 AATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTG 5595 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 |||||| ||||| | |||| || || || || Sbjct 5596 ATAGTTGAAGTCTCTGTCGTAGACAATAGCGGA 5628 Score = 168 bits (186), Expect = 6e-37 Identities = 362/533 (68%), Gaps = 15/533 (3%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| | || |||||||||||||| ||||||| |||||| | ||| || || || Sbjct 3800 GTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAG 3859 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | ||||| || |||| |||||| ||| |||||| Sbjct 3860 GTGATCTTGCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATA 3919 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGT 22323 || || || |||||||||||||| | || | ||| |||| || || ||||| || || Sbjct 3920 AAGGCACCGCGATCGGCGGCCATCTGGATAACATG-ACGCTGAGAAATCTCCCAAACAGT 3978 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTA 22381 ||| || || | |||| || || || ||| | || |||| | ||| || || Sbjct 3979 CTTATAGAGAGCCTTGATGTCGGCGGGGAT--ATTGGGGATGTTCTGAATGGAACCATTC 4036 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | ||| ||| | ||| ||| || | ||| ||| Sbjct 4037 TCGGCAATGATGCGGTTCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTG 4096 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || || || || | |||||| ||||| |||||||||||| Sbjct 4097 AGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTG 4156 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || || | |||||||| ||||| || || | |||||| ||||| ||| Sbjct 4157 GACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGC 4216 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGC 22618 || || || | ||| | |||||| | | ||||||| |||| | | || ||| || Sbjct 4217 ATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGA---TCTGCTCCTTCAGA 4273 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 | ||| ||||| | || || ||| | ||||| |||||| ||| |||| Sbjct 4274 CTGTCCCACTCCCATAACTCAGAAGGCTTGACATT---CCACATGTCGAATTG 4323 >seq29927 Length=230 Score = 116 bits (128), Expect = 3e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 ||||||| ||| |||| |||||| ||||| || || ||||| | ||||||||| | ||| Sbjct 226 GTTCTTTCGCAACTCCAGAAAGTCGAACACCTCTGCGTGCCAAGCCTCGAGGTAGATGGC 167 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 || || ||||||| ||| || |||||||| | ||||| | ||||||||||||| | || Sbjct 166 AACTGCACCCGGTCGCTTGTTACCGCCCTGGTTAACGTATCTGGCCGTGTTGTTGAAGAC 107 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGA 23565 | | ||| |||| || |||||||| Sbjct 106 GCGAATCATGGGCAGGATGCCGTTGGA 80 >seq326 Length=20000 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| ||||| || ||||| | || || ||| | || Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || |||||| Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 12637 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || || ||| || ||| || ||| Sbjct 12636 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAAC 12577 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||| |||| || | ||| |||| |||| Sbjct 12576 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGGTA 12528 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 31181 ATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 || ||| || ||||||||| ||||| ||||| || || ||||| || || || |||| Sbjct 13297 ATCGAAGTAACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAG 13238 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 || || |||| || | | || | ||||| || || ||| ||||| || | Sbjct 13237 GTCGAGTCGTCTGATACCATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATC 13178 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || ||||||||||||||||| || |||||||| || ||| | || ||| | ||| | Sbjct 13177 CCCCCCGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGCACTCTT 13118 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || || || || ||||| || || || Sbjct 13117 GCTGACTACAACATCCAGAAGGAGTCAACCCTTCACCTCGTCCT 13074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || |||||| | || || ||| | | Sbjct 12528 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTGCT 12469 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| || |||||| | || ||| ||||| || | || ||||||||| Sbjct 12468 GATACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 12409 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||| | |||||| || ||||||| || ||| Sbjct 12408 CAACGACTTATTTTTGCCGGAAAGCAGCTAGAAGACGGCCGCACGCTGAGCGACTACAAC 12349 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||| ||| | ||||| || ||| | ||| | || ||| Sbjct 12348 ATCCAGAAGGAAAGTACTTTGCATCTCGTGCTTCGTCTGCGTGGTGGT 12301 >seq433 Length=16792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| ||||| || |||||| | || || || | || |||| | Sbjct 5058 TTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 4999 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | ||| |||||||| ||| | || || ||||||||||| | Sbjct 4998 CGACAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 4939 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||||||||| ||| | || ||| | || || |||| || |||||||| || Sbjct 4938 GATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTGCGACTACAACATTCAGAA 4879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445563225246960