Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq752 86.0 1e-11 >seq752 Length=11106 Score = 86.0 bits (94), Expect = 1e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| || ||||| | |||| ||| || ||||||| | || | || Sbjct 4891 GCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAG 4950 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT--CACTCTCTCC 94515 |||||||||||||| ||| ||||| |||| ||||| | || | || || | || | Sbjct 4951 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCC--CCGTTCTTTTCGACGCGCTTC 5008 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||||||||| | | ||| | ||| |||| || || | | | ||||| ||| Sbjct 5009 ATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTA 5068 Query 94576 CCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTC 94613 ||| ||||||| | |||| |||||| |||||| Sbjct 5069 CCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTC 5106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989121683982165