Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq31 122 1e-22 >seq31 Length=45476 Score = 122 bits (134), Expect = 1e-22 Identities = 296/443 (67%), Gaps = 18/443 (4%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| ||||| || || || || ||||| || || || || || |||| || || ||| Sbjct 40087 TTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTT 40028 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||||||||| || || |||| ||||| | |||| | |||| || || | Sbjct 40027 TCCATGAAATCGAAGGGGTTGGCGGTTTTGTATA-CCTTTTCGTTACCAA--GAGCAACC 39971 Query 33411 AAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467 ||| | ||| ||||| ||||| |||||| ||||| | | ||||| |||| | Sbjct 39970 AATAGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGG 39911 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 || | ||||||||| | || | ||| ||||| |||||| || || | || ||| Sbjct 39910 AGAGCACACGGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATA 39851 Query 33528 ATAAATC-----TAAC-GGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 || ||| |||| | || | ||||||| || | ||| || || | Sbjct 39850 AT--ATCCTGGATAACTTGCTTGCTGGCTCGGTGCTTG----AGATGCGAGTGCAACAGA 39797 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || || ||||| |||||| || | || | ||||||||| || ||||| Sbjct 39796 CAGGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGA 39737 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| || ||||| || || || || || | ||| |||||| Sbjct 39736 CCTGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAG 39677 Query 33702 ATTCCTTCTACTGCAGCAAAGGC 33724 || || || || ||||| || || Sbjct 39676 ATGCCCTCCACAGCAGCGAAAGC 39654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629530537010640