Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq24664 93.3 2e-14 >seq24664 Length=239 Score = 93.3 bits (102), Expect = 2e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 44085 AGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTGCGCA-G 44143 |||||| |||||||| || || | ||| |||| | |||||||||| || | | Sbjct 188 AGGTAGAGATCGAGGATCGCGTCCTCTTCCTGGCGCTTCGCCTTGTCCTGCTTCCGGATG 129 Query 44144 CGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTACAC 44203 || ||| ||||| |||||||||||| | ||| |||| ||||| |||||| || | || Sbjct 128 CG-GATGACCTTGCGCAGGATCTTGACGTCGTAGCCCTCGCCCTTAGCCTCGGCGAAGAC 70 Query 44204 ATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCGTTCGATGCGGTGGAT 44263 ||||| |||||| || || || ||| || ||||||| |||||| | ||| | || Sbjct 69 CTCCTTCATGTCGGTCATGACGGCCTGCTTGTCCTCCTCCAGGCGTTCCAGGCGCTCGAC 10 Query 44264 GAAGG 44268 || || Sbjct 9 GATGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183530097387468