Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq752 138 1e-27 >seq752 Length=11106 Score = 138 bits (152), Expect = 1e-27 Identities = 445/685 (65%), Gaps = 12/685 (2%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | |||||||| | | ||| || |||| | | || || ||||| Sbjct 4952 CCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATG 5011 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 |||||||| || ||||| ||||| | || | || | | | || ||| || || || Sbjct 5012 AAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCG 5071 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 |||||| | ||| || || | | | || ||||| || || | ||| ||| Sbjct 5072 TGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATG 5131 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || ||||| || | |||||| || ||||| || | Sbjct 5132 GCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAG 5191 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | | ||| ||||| || || ||||||||||| ||||| |||| || || || Sbjct 5192 ACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCG 5251 Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | ||||| || | || | || || ||||| || ||||| || ||||| | | Sbjct 5252 GTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCCACCAGCCATCTTGGAGATCATGG 5309 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | || || | || || |||||||| || || || || ||| |||||| | ||| | Sbjct 5310 CACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGA 5369 Query 66430 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 ||||| ||||| | |||| ||| || || || || || | ||||| || ||| Sbjct 5370 AACAGGAAGACA---GCTGAC-ACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 5425 Query 66486 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545 || || || || || | || | ||| ||||| | | | || |||| | Sbjct 5426 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCT 5485 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605 ||| || || || || ||||| | ||||||||| |||| || || |||||| | Sbjct 5486 CCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCG 5545 Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665 || | ||| | | || ||| | |||| ||| || || ||||| || | || ||| Sbjct 5546 TTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAG 5605 Query 66666 TCTCGTTCGTAAATAATAACCGAGT 66690 |||| ||||| | |||| | |||| Sbjct 5606 TCTCTGTCGTAGACAATAGCGGAGT 5630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657872813064920