Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq752 170 3e-37 seq31 122 1e-22 >seq752 Length=11106 Score = 170 bits (188), Expect = 3e-37 Identities = 982/1548 (63%), Gaps = 52/1548 (3%) Strand=Plus/Plus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || || || || || ||||| |||| ||| || | || |||||| || || ||| Sbjct 4106 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 4165 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | | ||||| || |||| |||||| | || ||||| || ||||| || || Sbjct 4166 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCG 4225 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAAT 79228 | || || || | || ||||| | || |||| | || || ||| ||||| | Sbjct 4226 AGCAGCAACGAGTTGCGAATACCGT--GCTCCTTGATCTGCTCCTTCAGACTGTCCCACT 4283 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CG 79287 |||| | ||||| || |||||||| | || |||| |||||||| || | || || Sbjct 4284 CCCATAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACC-TTCCGAGGCG 4342 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || || | || || || |||| || || ||| | ||| | || Sbjct 4343 GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC 4402 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA 79407 | || ||| || ||||| ||||| |||| ||| ||||| || | || || | Sbjct 4403 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGAC 4462 Query 79408 TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || || || | |||| || ||| ||||| || | || |||||||||| |||||| Sbjct 4463 TCGAAGGGC-ATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGAT 4521 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTA 79525 |||| ||||| | | || | || | ||| || ||| || |||| || | || | Sbjct 4522 GGGTCGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAA 4580 Query 79526 TAATTTTATTGAGATTCCTGACTATTACTT---TGACCACATCCTTTAGTTTGAGAAAAT 79582 | || || ||||| || | ||| | |||| ||||| || | || || | || | Sbjct 4581 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACC---TCGTGGAGCTTCTGGAAGT 4637 Query 79583 CAAATCGTCCATCTATT------ACAAA--CATGTTCAACGCGACAGATGCCAGATTACA 79634 | | || || ||| | || || || | || || | ||| |||| || || Sbjct 4638 CGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCA 4695 Query 79635 AACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTT 79694 ||| || ||||||| || | || | || || || ||||| ||||| | Sbjct 4696 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 4755 Query 79695 AATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 79754 ||||||||| | || | || || |||||| |||| || |||||||| || || || || Sbjct 4756 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 4815 Query 79755 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 79814 || | || ||||| |||| || || | || | | ||||| | || | | | Sbjct 4816 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA- 4873 Query 79815 TATAGACTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATATAATCGTTCGAACTCG 79869 |||| |||| | || | || || | | ||| | | | || || || Sbjct 4874 -ATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCC 4930 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 || || | ||| | | ||||| || |||| |||||||| | | ||| || || Sbjct 4931 TCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCG 4990 Query 79930 TCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 | || ||| || || ||||| |||||||| || ||||| ||||| | || || || | Sbjct 4991 T--TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 5048 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 | | || || || || || |||||| | ||| || || | | | || | Sbjct 5049 GAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTG 5108 Query 80048 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTA 80107 ||||| || || | ||| ||||| | | || ||||| ||||| || ||||| || | Sbjct 5109 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAA 5168 Query 80108 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 80167 |||||| || ||||| || | || | | ||| ||||| || || ||||||||||| | Sbjct 5169 CGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGT 5228 Query 80168 TGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCC 80225 |||| |||| || || || | ||||| || | || | || || ||||| Sbjct 5229 TGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCC 5286 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285 || ||||| || ||||| | || || || | || || |||||||| || ||||| Sbjct 5287 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCT 5346 Query 80286 ATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCG 80341 || || |||||| | ||| |||||| ||||| | |||| ||| || || | Sbjct 5347 GTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGAC-ACTGGGGGGTACCAG 5402 Query 80342 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401 | || || | ||||| || ||||| || || || |||| || | ||| |||| Sbjct 5403 CGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCT 5462 Query 80402 CAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCT 80461 | | | | || |||| | ||| || ||||| || ||||| | |||||||| Sbjct 5463 CCAAAACGCGCTCAATATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCT 5522 Query 80462 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAA 80521 | |||| || || |||||| || | ||| | | || ||| | |||| ||| || | Sbjct 5523 GGGGTCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGA 5582 Query 80522 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 | ||||| || | || ||||||| ||||| | |||| | |||| Sbjct 5583 AGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATAGCGGAGT 5630 >seq31 Length=45476 Score = 122 bits (134), Expect = 1e-22 Identities = 301/449 (67%), Gaps = 17/449 (4%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| ||||| || || || || ||||| || || || || || |||| || || ||| Sbjct 40087 TTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTT 40028 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||||||||| || || |||| || || | |||| | |||| || || | Sbjct 40027 TCCATGAAATCGAAGGGGTTGGCGGTTTTGTATA-CCTTTTCGTTACCAA--GAGCAACC 39971 Query 49789 AAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 49845 ||| | ||| ||||||||||| |||||| ||||| | | ||||| |||| Sbjct 39970 AATAGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGG 39911 Query 49846 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 || | ||||||||| | || | ||| ||||| |||||| || || || || ||| Sbjct 39910 AGAGCACACGGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATA 39851 Query 49906 ATA-----GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAAC 49960 ||| || |||| || ||| || | | | ||| | ||| || || || Sbjct 39850 ATATCCTGGA--TAAC--TTGCTT-GCTGGCTCGGTGCTTGAGATGCGAGTGCAACAGAC 39796 Query 49961 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 50020 | || || || ||||| |||||| || | || |||||||| || || ||||| | Sbjct 39795 AGGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGAC 39736 Query 50021 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGA 50080 | ||||| || |||||||| || ||||| || || || ||||| | || ||||||| Sbjct 39735 CTGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGA 39676 Query 50081 TTCCTTCTACTGCGGC-AAAGGCAACAAG 50108 | || || || || || |||| || |||| Sbjct 39675 TGCCCTCCACAGCAGCGAAAGCCACCAAG 39647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717941422059320