Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq31 147 3e-30 seq752 136 6e-27 seq671 93.3 6e-14 >seq31 Length=45476 Score = 147 bits (162), Expect = 3e-30 Identities = 209/289 (72%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| | ||||| || ||||||| ||||||| |||||||| Sbjct 39183 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 39242 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| ||| || |||||||| | | ||| ||| || ||| | | || || || Sbjct 39243 TCCAAAGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATTTCA 39302 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||||||||||| |||||||| | || || || || ||||| || || | | |||| || Sbjct 39303 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTTCTTGA-GCG 39361 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || |||||||| ||||||| Sbjct 39362 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGTTGCTTCTATGGATTCCAGATCATGA 39420 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | ||||| | || || |||| |||||| ||||| || | ||||| Sbjct 39421 TGGAGAATATTCATTCTGAAACATACTCTCTCCTGATCGATAGCTACAT 39469 Score = 111 bits (122), Expect = 2e-19 Identities = 334/507 (66%), Gaps = 33/507 (7%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTAC--- 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | Sbjct 39582 ATCCGAAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTT 39638 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| || || |||||||||||||| ||| ||||| Sbjct 39639 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCC 39698 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || ||||| || || || | |||||| || Sbjct 39699 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAACTT 39758 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || || ||||| | ||| ||||||||| | ||||| | ||| | Sbjct 39759 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGT---CTGTTGC---ACT---CG 39809 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTG 125654 | || | || | || ||||| | || || ||| | ||| | ||||| || || Sbjct 39810 CATCTCAAGCACCGAGCCAGCAAGCAA---GTTATCCAGGATATTATCACCGACGCTGTT 39866 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTG 125713 | || || ||||||||| | ||||| | || || || || | | ||||||||| Sbjct 39867 GGCATTGAGCAAGAGTTTTTGACCGAGGCTCTTCC-GTGTGCTCTCCTAGGCATGAACGC 39925 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATT 125771 || |||||| | || || || ||||| || ||||| ||| || |||| || Sbjct 39926 CACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTG-----GTTGCTCTT 39980 Query 125772 GG---CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTA 125828 || | ||| | ||||| || || ||||| ||||||||| | ||| || | Sbjct 39981 GGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTG 40040 Query 125829 GAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || ||||| ||||| ||||||||| Sbjct 40041 GGTGGCAAGACAAACTTCTTCGAGAAG 40067 >seq752 Length=11106 Score = 136 bits (150), Expect = 6e-27 Identities = 310/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| |||||||| || || || || || || | ||| ||||| | || |||| Sbjct 5174 GATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTT 5115 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| || |||||| | || |||| || ||| || ||||| | Sbjct 5114 GGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAATC 5055 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042 | || | ||| | || ||| || ||| | |||||| | ||||||||||||||| || Sbjct 5054 GTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAA 4995 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || | || | |||| ||| ||||| ||| || || || || ||| | ||||||| Sbjct 4994 AGAACGGGG--ATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTA 4937 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| || |||||||| ||| || |||| |||||||| || |||| Sbjct 4936 TGGCGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGCAAGAC 4877 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| ||| | |||| || ||| | ||||| | | | ||| || || || | Sbjct 4876 TATTCG-TGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAAC 4819 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||||||| || || | || |||||||| || |||| ||| Sbjct 4818 CCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACC 4759 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || ||||||| ||||||||||| || | |||||| Sbjct 4758 ATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 4720 >seq671 Length=12394 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || Sbjct 878 TCAATGTACTTGGCGACGCGCTCAAAGTCACTCTCGCCGAAACCACGGCTCGTCATGGCT 937 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||||| | |||||||| || | | |||||||||||| ||||| | | ||| Sbjct 938 GGTGTACCGATACGGATGCCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTTC 997 Query 126802 TTGTTGCAAGCGAT 126815 ||||||||||| || Sbjct 998 TTGTTGCAAGCAAT 1011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740721434479880