Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq22239 87.8 2e-12 >seq22239 Length=250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 7031 GAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCA 7090 ||||| || |||||||| ||||||||| || | | |||||||| ||| ||||||||| Sbjct 249 GAACCTGAGTGAGGTTGTACGTTTGCGTAAGTCGCGCCAAACAGTTGTTTTGCACGCTCA 190 Query 7091 ATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGA 7150 || || | | | || | | | || | | | || || || || || || ||||| ||| Sbjct 189 ATCGCTAAGGTTTCAACTACGTCCACATACTCACAACCACCGTAGTAACGCTTGCCTGGA 130 Query 7151 TATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAA--CATCGTCTG 7208 || || || || ||||| ||||| || ||||| || |||| ||| | | | | ||| Sbjct 129 TAGCCTTCGGCGTACTTATTGGTTAATTGTGAACCTTGCGCTTGCATCACGCGTGGACTG 70 Query 7209 ACACATAGTTTTCGGACGCAATCA 7232 |||||||| || ||||||| Sbjct 69 --GTGTAGTTTTCAGATGCAATCA 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555110072395480