Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq23686 95.1 3e-15 >seq23686 Length=244 Score = 95.1 bits (104), Expect = 3e-15 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 16065 CGGGCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCAAGCACTACTCCACGGCCGACCT 16124 ||| ||| ||||||||||| ||||| ||| |||||||||||| ||| | |||||| Sbjct 182 CGGCCTGGGCCGCGTGCTGGTGTGGCCCTACTTGTTCAAGCACTTCTCGGTTGGCGACCT 123 Query 16125 GGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTACCCGCCCGGCAC 16184 ||| || | ||||| ||||||||||||||| | || |||| ||||| ||| | || Sbjct 122 GGCCGAGTTACTCGACATCTACGGTCTGCCGCTGCGCATCGGCAAGTATCCG--AGCAAC 65 Query 16185 GCC--CGACGAAGAGAAGGTAACCCTGCTGCGAGCGGTGACCGGCCTCGGCCA 16235 ||| | ||| || |||| || || ||| || || | ||| ||||||| Sbjct 64 GCCAGCCCCGAGGAAAAGGCCACGCTCTGGCGCGCCGTCGCGGGCATCGGCCA 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120181539076638