Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq31 107 2e-18 >seq31 Length=45476 Score = 107 bits (118), Expect = 2e-18 Identities = 175/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| ||||||||||| |||||| || ||||| ||||| || || | |||||| | | Sbjct 39441 TTTCAGAATGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 39382 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||||| ||| | || | || | |||||| || || || |||||| ||||| Sbjct 39381 CCTGAACCTCGCCGCTGAAACGCTCAAGAAGGTTTTCATTGACAATGCCGTCAGAAGCAG 39322 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA-AC--TTTAACC 13625 |||| || || | ||||| ||| || | ||| |||| || || || || || Sbjct 39321 CAAAGAATGCCAAAATGTGTGAAATGAAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCC 39262 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | || ||||| || | ||| | ||| || | ||||| ||||| || |||||| Sbjct 39261 AATCGTGCAAGTCTTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCAGCCT 39202 Query 13686 TCTTATACAT 13695 |||| ||||| Sbjct 39201 TCTTGTACAT 39192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430790874519126