Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq22247 143 9e-30 >seq22247 Length=250 Score = 143 bits (158), Expect = 9e-30 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22358 CCTGTATCGCGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCT 22417 |||||| ||||| || ||||| || || || |||||| |||| |||||| ||| |||| Sbjct 245 CCTGTACCGCGTGGTGCAGCATCACCTGGACGAGTTCATGCGGCAGTTCCGCTGGTCGCT 186 Query 22418 GACGAGCCGGCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCGGAAACCCTCACCGACAT 22477 || ||||| ||| ||| || |||||| | | ||| || || ||||| || ||||| Sbjct 185 CACCAGCCGCCAGATGTACGCCTGGCTGCGGGAAACGAGGCCAGACACCCTTACGGACAT 126 Query 22478 CCAGCGTGCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGCGGGAAGCTTGAAGG 22537 |||||| ||||| ||||||| |||||| || ||| ||| ||||| ||| | || || Sbjct 125 CCAGCGGGCGGCGCGCTTCTTCTACCTCCAGAAACTCGCCTTCGGCGGCAAGGTGGACGG 66 Query 22538 GCAGACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGC 22589 ||||| | ||| ||| | || || | | | ||||||||||||||||| Sbjct 65 CCAGACCTACGGCACGTCCACCACGGCCCCGATGCGCCTGAACCTGCTGCGC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175370432037762