Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq326 132 1e-25 >seq326 Length=20000 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| || ||| ||| ||||| || || ||||| || || | ||||| Sbjct 12316 AAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 12375 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 |||||| || ||||| |||||||| || | || || || ||||| ||||| || ||||| Sbjct 12376 TTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATC 12435 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | ||| ||| | || | |||||| || ||| || || | || ||||| Sbjct 12436 CTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGACTTCCAAGGTGATAGT 12495 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || ||||| || ||||| Sbjct 12496 CTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 Score = 125 bits (138), Expect = 2e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| || || | || ||||| ||||| ||||| ||||| | || || | ||| ||| Sbjct 12773 AGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCT 12832 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || | | ||| ||||||||||| || ||||| |||||| Sbjct 12833 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 12892 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | ||| ||||| || | ||| ||| | || ||||| || || || ||| Sbjct 12893 TGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 12952 Query 104528 TTACCAGTAAGTGTTTTTACAA 104549 || ||||| | || || |||| Sbjct 12953 TTTCCAGTCAAAGTCTTGACAA 12974 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | || || || ||||| || || |||||| Sbjct 13056 ATGCCACCTCGGAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 13115 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | |||||| || || || |||||||| || || || | ||| || || || Sbjct 13116 GCAAGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGG 13175 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || |||||||||||||| | || ||||| || | |||||| | || Sbjct 13176 GGGATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCG 13235 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| || || || || || || || || ||||| Sbjct 13236 ACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 13285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150860487176804