Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq226 89.7 4e-13 >seq226 Length=24001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 5597 TGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACC 5656 ||||| | || ||||||| ||| | ||| || ||| | | | | |||||| |||| Sbjct 1850 TGCGCCACTCTGTCGCCCTGCTTGATCTCAAAGTCGGTCTCGGCATGGTTGAAAAGCAGA 1909 Query 5657 ACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGC 5716 || || | ||||||||| |||||||| || || |||||||| |||||||| || Sbjct 1910 ACCTTGACCTGGCCGCGGTAATCGGCGTCAATGACTCCCGCGCCGGTATCGATGAAATGT 1969 Query 5717 TTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 ||| || || || ||||||||||| | |||||||| Sbjct 1970 TTGCTTGCGAGACCAGAGCGGGGAGCAATGCGGCCGT 2006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429863286915656