Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq26 96.9 3e-15 >seq26 Length=47302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| || ||||||||||| || |||||||| || || Sbjct 11969 ACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 12027 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||| ||||||||||| | | || | || ||||| ||| | Sbjct 12028 ACAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGG 12087 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || || ||||| | | || ||||| |||| |||||| Sbjct 12088 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAAGACTC 12145 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 | ||| | || || || || || ||||| ||||| || |||||||||||| || || Sbjct 12146 CACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 12203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421063998994463