Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq22247 165 2e-36 >seq22247 Length=250 Score = 165 bits (182), Expect = 2e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 26203 CCTGTACCGCGTCGTTCAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGCT 26262 |||||||||||| || |||||||| ||||| |||||| | || |||||| ||| |||| Sbjct 245 CCTGTACCGCGTGGTGCAGCATCACCTGGACGAGTTCATGCGGCAGTTCCGCTGGTCGCT 186 Query 26263 CAGCTCTCGCCAGGTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACAT 26322 || | |||||| | | | ||||||| ||| || |||| || || || || ||||| Sbjct 185 CACCAGCCGCCAGATGTACGCCTGGCTGCGGGAAACGAGGCCAGACACCCTTACGGACAT 126 Query 26323 CCAGCGCGCCGCGCGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGG 26382 |||||| || |||||||| | |||||| ||| | ||| ||||||||| ||| || || Sbjct 125 CCAGCGGGCGGCGCGCTTCTTCTACCTCCAGAAACTCGCCTTCGGCGGCAAGGTGGACGG 66 Query 26383 CCAGAGCTACGGAACCGCCACCACCTCACCGCCTGGGCTCAACCTGTTGCGCCTGG 26438 ||||| |||||| || ||||||| | ||| | || |||||| ||||||||| Sbjct 65 CCAGACCTACGGCACGTCCACCACGGCCCCGATGCGCCTGAACCTGCTGCGCCTGG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122829991804806