Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq326 109 5e-19 >seq326 Length=20000 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || |||| ||||| |||| |||||| ||||| || | Sbjct 12517 AAAAATTTGCATACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAAT 12576 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| || ||| | |||||| ||||| || || ||||||| | || || Sbjct 12577 GTTGTAGTCGGCCAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTG 12636 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || ||||| ||||| ||||| | ||| || ||||| || ||| || || Sbjct 12637 CTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATC 12696 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| || || ||||| | ||| || || ||||||||||| Sbjct 12697 CGAAGATTCGACTTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || | ||||| |||| |||||||| |||||||||||||| || Sbjct 12829 ATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTT 12888 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || | ||||| | ||| ||||| | | ||||| |||| ||||| Sbjct 12889 ATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 12948 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| |||||||| | ||| || |||| Sbjct 12949 GGTCTTTCCAGTCAAAGTCTTGACAA 12974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448086874474680