Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq25565 111 7e-20 >seq25565 Length=235 Score = 111 bits (122), Expect = 7e-20 Identities = 148/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 11306 GCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGC 11365 ||||| ||||| | ||| || || ||||| |||||||| |||||||| ||||| || Sbjct 27 GCGATCTCGGCTACTTTGCCGAACAGAACGACACGGTGCCATTCGGTGCGTTCCTGGAGC 86 Query 11366 TGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCC 11425 ||| |||||||||||| |||||||| ||| | || || || ||| | ||| ||||| Sbjct 87 AGGCTGGTCTGCTTGTCCTTCCAGCTGTCGGTGGTTGCAAGCGTGATGTTGGTCACCGCG 146 Query 11426 TTTCCGCCCGGGGTAGATCTTGCGTCT--GGATCCTGGCCCAGATGGCCGACCAGGATTA 11483 || | | ||| |||| | |||| ||||| ||||| | ||||| || ||| | Sbjct 147 TTGC--CATTGGGCAGATAGCGGGTCTCGGGATCACCGCCCACGTTGCCGATCAAGATGA 204 Query 11484 CCTTGTTCACTCCGCGTGCCATGG 11507 |||| ||||| || | ||||||| Sbjct 205 CCTTATTCACCCCTCTGGCCATGG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208406544454108