Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq539 170 3e-38 seq2 158 2e-34 >seq539 Length=14833 Score = 170 bits (188), Expect = 3e-38 Identities = 185/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 5758 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 5816 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| |||| | || |||| ||||||| Sbjct 5817 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAAGAGAC 5876 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| |||||| || || |||| |||||| || ||| || || Sbjct 5877 CCGCACTGTCCTCAAGACGTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 5936 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || | ||||| || |||| || || || Sbjct 5937 GCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTTGTCTACGCTCTGAAGCGACAGGG 5996 Query 16672 CCG 16674 ||| Sbjct 5997 CCG 5999 >seq2 Length=70495 Score = 158 bits (174), Expect = 2e-34 Identities = 196/263 (75%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| |||| |||||| || ||||| || || ||||||||||| || | Sbjct 16030 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCCA 16088 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || ||||||||| |||| | || | || ||||||| Sbjct 16089 TTCGCCGTCTTGCTCGCCGTGGCGGTGTCAAGCGTATCTCCGCCATGATTTACGAAGAGA 16148 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACC 16609 ||| ||| |||||| ||||| || || |||| ||||||| || || || || Sbjct 16149 CTCGCACTGTCCTGAAGACTTTCCTGGAGGGTGTCATCCGTGATGCTGTTACA-TACACA 16207 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || ||||| ||||| ||||| ||||| || | || |||| || || | || || ||| Sbjct 16208 GAACACGCCAAACGAAAGACCGTCACGTCTCTCGACGTCGTGTACGCGCTAAAGCGACAA 16267 Query 16670 GGCCGTAAGATTTATGGTTTTGG 16692 ||||||| | ||||| || || Sbjct 16268 GGCCGTACCCTATATGGGTTCGG 16290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041861623859