Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq22239 111 2e-19 >seq22239 Length=250 Score = 111 bits (122), Expect = 2e-19 Identities = 149/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 7019 GAACCGGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCA 7078 ||||| || || ||||| ||||||||| || | | |||||||| ||| ||||||||| Sbjct 249 GAACCTGAGTGAGGTTGTACGTTTGCGTAAGTCGCGCCAAACAGTTGTTTTGCACGCTCA 190 Query 7079 ATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGA 7138 || || | | | || | | || | | ||||||| ||||| || || ||||||||| Sbjct 189 ATCGCTAAGGTTTCAACTACGTCCACATACTCACAACCACCGTAGTAACGCTTGCCTGGA 130 Query 7139 TATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGAC 7198 || || || || ||||| ||||| || ||||||||||||| ||| || | | |||| Sbjct 129 TAGCCTTCGGCGTACTTATTGGTTAATTGTGAACCTTGCGCTTGCATCAC-GCGT-GGAC 72 Query 7199 --ACATAGTTTTCGGATGCAATCA 7220 |||||||| |||||||||| Sbjct 71 TGGTGTAGTTTTCAGATGCAATCA 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553101388346040