Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq752 374 2e-98 >seq752 Length=11106 Score = 374 bits (414), Expect = 2e-98 Identities = 1078/1634 (66%), Gaps = 42/1634 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | ||| ||||||| Sbjct 5433 TTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAGTGTCAGCTGTCTTCC 5374 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | | ||||||||||| ||| || || |||| ||||| || |||| Sbjct 5373 TGTTTCCTAGTCGACATGAAGGACGACAGCATTGATGGCATCTACGACACTCTCAAGACC 5314 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || ||||| || | | || ||||| | ||||| Sbjct 5313 TGTGCCATGATCTCCAAGATGGCTGGTGGAATCGGCTTGAACG-TCCACCGCATCCGTGC 5255 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||||| |||||| || ||| || || || | ||||||||||| Sbjct 5254 TACCGG-CTCTTACATTGCCGGCACCAACGG-TACATCCAACGGCATCATTCCCATGCTT 5197 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| || ||||| |||||||| || ||||| || || Sbjct 5196 CGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCA 5137 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || ||||||||| || || || | || || |||||||| | || || Sbjct 5136 TTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAG 5077 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || || || ||| ||| || ||| | | || Sbjct 5076 AACCACGGTAAGGAAGAAAATCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 5017 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021 | || ||||||||||| || | | | | ||||| | ||| | || || |||| | Sbjct 5016 CTCTTCATGAAGCGCGTCGAA--AAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGT 4959 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || | ||| | || || || | || ||||| |||||||||||||| Sbjct 4958 GCCCTGGCCTGGCTGATTGCTATGGCGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGC 4899 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| | || ||||| |||| || |||||||| |||| ||||| | || | Sbjct 4898 GTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGT 4839 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| || || || | |||| |||| ||||||| ||| | |||||| | ||| || Sbjct 4838 CCCAGACCGAAACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCA 4779 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| || || |||| |||| |||||| || || ||||| ||||| ||| Sbjct 4778 ACCAGAAGAACCTGGGAACCATTC-GCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 4720 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || || || ||| ||| || || ||| | || || | || || || || || || Sbjct 4719 TGTGCCCCTGATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTC 4660 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTA 364372 ||||| || | ||| |||| | || | || || || ||| || | Sbjct 4659 GACTACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAGGTCAC---TCAAGTGGTC 4603 Query 364373 CT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | | || ||| ||||| | || ||| || |||| || ||| || || || Sbjct 4602 GTCCGTAACCTCAACAAGATCATTGACGTCAACCATTACCCCATTGAGGAGGCTCGCAAC 4543 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || ||||| ||||| || || ||| ||||||| ||||| || ||||||| || Sbjct 4542 AGC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTT 4488 Query 364487 TTATGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || | ||||| ||| | || || || || || || |||| || || ||| |||| Sbjct 4487 TTCT--TGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGAT 4430 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGG 364603 ||| || || || || || || |||| || || ||| ||| |||| | ||| | Sbjct 4429 CTTCGAGACCATCTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAA-G 4371 Query 364604 GAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | |||||||| | |||| || || ||| | || | | || || || | | Sbjct 4370 GCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTATTCTTCAATTCGACATGT 4311 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAG 364722 ||||||||| ||| |||| |||| | ||||| | || | | | | | ||| || Sbjct 4310 GGAATGTCAAGCCTTCTGAGTTATGGGAGTGGGACAGTCTGAAGGAGC-AGATCAAGGAG 4252 Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || |||| ||||||||| | | || ||||||||||| || || || | || || Sbjct 4251 CACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCATCGACCTCGCAAATT 4192 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 4191 CTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTG 4132 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || ||||| | ||| || || | || |||||||||| |||| || || Sbjct 4131 GCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGACATGGGTCTC 4072 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| ||| |||||||||| ||||| |||| |||||||| | |||||||| || Sbjct 4071 TGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAATGGTTCCATTCAGAACATCCCC 4012 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| || | || || || || ||||| ||||| ||| | Sbjct 4011 AATATCCCCGCCGACATCAAGGCTCTCTATAAGACTGTTTGGGAGATTTCTCAGCGTCAT 3952 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 | || | ||||| |||||||||||||| |||||| ||| ||||||| | ||||| Sbjct 3951 GTTATCCAGATGGCCGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTT 3892 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || || | |||| | || || ||||| || || ||||| | Sbjct 3891 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 3832 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 3831 GGTCTCAAGACGGG 3818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302744696414066