Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq24920 192 2e-44 >seq24920 Length=238 Score = 192 bits (212), Expect = 2e-44 Identities = 175/218 (80%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 39366 GCTGGAAGTCGCCGAAGAGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCCGGCA 39425 ||| |||||||||||| || ||||| || | || ||||| |||||||||||||||| Sbjct 227 GCTTGAAGTCGCCGAACAGGATCGGGCACGCGGCGGCGGCCACGTCCGGCATGTCCGGCA 168 Query 39426 CCTCGGTAACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACGGTTGCC 39485 | || || ||||| ||||| ||| |||| |||||| || || ||||| ||||| |||| Sbjct 167 CTTCCGTCACCGGGTAGCCGCACAGGGTCGACGGCTGGCCGGCGACGTAGGACGGCTGCC 108 Query 39486 AGAGATAGTTCCCTTGGCCGTCCTTCAGCTTCCGCACCT-GACGCTGCGTGTTGCGGTTC 39544 | || |||||||| | ||||||||||||| ||| ||| | || |||||||||||||| Sbjct 107 ACAGGTAGTTCCCGTTGCCGTCCTTCAGCAGCCGGACCGCGGCGA-GCGTGTTGCGGTTC 49 Query 39545 ATCGCGAAGCGGGCGTTGCCCGTGAACGCGCTCGGCAG 39582 || ||||||||||||||||||||||||| |||||| Sbjct 48 ATGACGAAGCGGGCGTTGCCCGTGAACGCAGCCGGCAG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143355500448108