Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq13803 140 2e-28 seq10955 140 2e-28 seq9062 140 2e-28 seq968 140 2e-28 seq8406 109 4e-19 seq326 96.9 2e-15 seq26 87.8 1e-12 seq13303 82.4 5e-11 >seq13803 Length=355 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 128 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 69 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 68 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 34 >seq10955 Length=404 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 224 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 283 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 284 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 318 >seq9062 Length=445 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 333 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 274 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 273 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 239 >seq968 Length=8442 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2314 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2373 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2374 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2408 >seq8406 Length=464 Score = 109 bits (120), Expect = 4e-19 Identities = 74/83 (89%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 448 AAGCCCGTTCCCTTAGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 389 Query 25957 TAATCCTTTCATGCGCGTCACTA 25979 |||||| ||||||||||||| || Sbjct 388 TAATCCATTCATGCGCGTCAGTA 366 >seq326 Length=20000 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||| | ||| | ||| | ||| || ||||| || || ||||| || Sbjct 12301 ACCACCACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCT 12360 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || |||| |||| || ||||||||||| || || ||||| || |||| || Sbjct 12361 CAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 12420 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || || ||| ||| || || ||| | | || ||||| || ||| || Sbjct 12421 GATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGAC 12480 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || ||||| || || |||||||| || || || || ||||| Sbjct 12481 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 >seq26 Length=47302 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | || |||| ||||||||| || ||||||||||| || || ||||| || | Sbjct 11969 ACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCA 12028 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || || ||||| || || ||||| || || | ||| Sbjct 12029 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGG 12088 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||| || |||||| || || ||| || || | || || || | || || Sbjct 12089 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 12148 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || ||||| || ||||| | |||||| ||||| |||||||| || Sbjct 12149 CTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 12199 >seq13303 Length=363 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAA-----TCTCGT 25956 |||||| ||||||||||| | ||| |||||| |||||| ||| | ||| | | | Sbjct 3 AAGCCCTTTCCCTTGGCTTTAGTTACGCTAGCTAGTAGTTAGTGTCTAACGAAATTCCTT 62 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||| ||| Sbjct 63 TAATCTATTCATGCGCGTCACTAATTAGATGTCGA 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334798351871753