Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq752 147 3e-30 seq31 98.7 1e-15 >seq752 Length=11106 Score = 147 bits (162), Expect = 3e-30 Identities = 450/690 (65%), Gaps = 12/690 (2%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | |||||||| | | ||| || |||| | | || || | Sbjct 4947 CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCT 5006 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| |||||||| || ||||| ||||| | || || || | | | || ||| || | Sbjct 5007 TCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCT 5066 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || |||||| | ||| || || | | | || | ||||| || || | || Sbjct 5067 TACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGT 5126 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | ||||| || ||||| || ||||| || | |||||| || ||||| | Sbjct 5127 AGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGT 5186 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| ||||| || || ||||||||||| ||||| || | || || Sbjct 5187 TGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAG 5246 Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | ||||| || | || | || || ||||| || ||||| || ||||| Sbjct 5247 AGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCCACCAGCCATCTTGGAGAT 5304 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || | || || |||||||| || || || || ||| |||||| | Sbjct 5305 CATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGAC 5364 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAG 63491 ||| |||||| ||||| | |||| ||| || || || || || | ||||| | Sbjct 5365 TAGGAAACAGGAAGACA---GCTGAC-ACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTG 5420 Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63551 | ||||| || || || || | || | ||| ||||| | | | || |||| Sbjct 5421 AGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATAT 5480 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 | ||| || || || || ||||| | ||||||||| |||| || || |||| Sbjct 5481 TGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCT 5540 Query 63612 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63671 || ||| | ||| | | || ||| | |||| ||| || || ||||| || | || Sbjct 5541 TGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGT 5600 Query 63672 AAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 ||||||| ||||| | |||| | |||| Sbjct 5601 TGAAGTCTCTGTCGTAGACAATAGCGGAGT 5630 >seq31 Length=45476 Score = 98.7 bits (108), Expect = 1e-15 Identities = 291/443 (66%), Gaps = 18/443 (4%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| ||||| || || || || ||||| || || || || || | || || || ||| Sbjct 40087 TTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTT 40028 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||||||||| || |||| || || | |||| | |||| || || | Sbjct 40027 TCCATGAAATCGAAGGGGTTGGCGGTTTTGTATA-CCTTTTCGTTACCAA--GAGCAACC 39971 Query 32490 AAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 32546 ||| | ||| ||||||||||| |||||| ||||| | | ||||| |||| Sbjct 39970 AATAGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGG 39911 Query 32547 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 || | ||||||||| | || | ||| ||||| ||||| || ||||| || ||| Sbjct 39910 AGAGCACACGGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATA 39851 Query 32607 ATA-----GATCTTAC-TGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 32660 ||| || | || || || | ||||||| | | ||| || || | Sbjct 39850 ATATCCTGGA--TAACTTGCTTGCTGGCTCGGTG----CTTGAGATGCGAGTGCAACAGA 39797 Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || || ||| | |||||| || | || | |||||| || || ||||| Sbjct 39796 CAGGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGA 39737 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || |||||||| || ||||| || || || ||||| | || ||||| Sbjct 39736 CCTGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAG 39677 Query 32781 ATTCCTTCTACTGCCGCAAAGGC 32803 || || || || || || || || Sbjct 39676 ATGCCCTCCACAGCAGCGAAAGC 39654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633343198454800