Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq326 111 1e-19 >seq326 Length=20000 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | |||||| | ||||| || || || Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | || || || | ||| ||||| ||||| ||||| |||||||| Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCA-AGACAAGGAAGGCATTCCCCCTGACCA 12638 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| || ||| ||| ||| ||||| Sbjct 12637 GCAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAA 12578 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || ||||| || || Sbjct 12577 CATTCAGAAGGAGTCTACTCTGCATTTGGTCCT 12545 Score = 102 bits (112), Expect = 7e-17 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068 |||| ||||||||||| || || ||||||| | || || ||||| || ||||| |||| Sbjct 12974 TTGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCG 12915 Query 25069 AGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 | || || || | || | ||| || || ||||| ||||| ||||| || ||||| Sbjct 12914 A--CAATGTCAAATCGAAGATTCA-GGATAAGGAAGGTATTCCTCCTGATCAGCAGCGAT 12858 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || || || || || || | ||||||| ||| || | | ||| |||||||| || | Sbjct 12857 TGATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGA 12798 Query 25186 AAGAATCCACGCTACA 25201 | |||||||| || || Sbjct 12797 AGGAATCCACTCTTCA 12782 Score = 100 bits (110), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | ||||| | ||||| || || || Sbjct 12528 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTGCT 12469 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| ||||| || | || | ||| || || || || || || || ||| Sbjct 12468 GATACCATCGA--CACTGTCAAATCCAAGATTCAG-GATAAGGAGGGAATCCCTCCCGAC 12412 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || ||||||| | ||||| || |||| ||| Sbjct 12411 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTAGAAGACGGCCGCACGCTGAGCGACTAC 12352 Query 25176 AATATTCAAAAAGAA 25190 || || || || ||| Sbjct 12351 AACATCCAGAAGGAA 12337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433135432151345