Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq31 129 7e-25 >seq31 Length=45476 Score = 129 bits (142), Expect = 7e-25 Identities = 201/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||||| | ||||| || |||||||||| | ||||||||| || ||| Sbjct 39469 ATGTAGCTATCGATCAGGAGAGAGTATGTTTCAGAATGAATATTCTCCATCATGATCTGG 39410 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| ||||| || | ||| |||| | ||| || || || | ||| | || Sbjct 39409 AATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGAAGG 39350 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || || || || || ||||| || ||||| || || || || | | Sbjct 39349 TTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAAATGAAGTAT 39290 Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||| || || | | | || | ||||||| | ||||| || ||||||| ||| Sbjct 39289 TTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCTTTGGACAGATCGATCTCT 39230 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || ||||| || || |||||||| | ||| || Sbjct 39229 TCGGCCGTCCAGAAAGAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 39183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556606989808120