Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq842 132 1e-25 >seq842 Length=9876 Score = 132 bits (146), Expect = 1e-25 Identities = 435/671 (65%), Gaps = 9/671 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| ||| | |||| ||||| || Sbjct 2312 GTCGGCTCGCTGTCTGGTGGTTGGAAGATGAAGCTCGCCTTGGCTCGTGCCATGCTCAGA 2371 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || ||||| || | ||| ||||| | ||| Sbjct 2372 AAAGCCGACGTGCTTCTCCTCGACGAACCCACCAATCATCTCGACGTTGCCAACATCGCC 2431 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || || | | |||||||| ||||||||| Sbjct 2432 TGGCTGGAGAACTACCTCAAGACTCACCCAAACATCACCAGTCTCATTGTTTCTCACGAC 2491 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || || ||||| || || | | | |||| ||||| |||| || |||||| Sbjct 2492 TCCGGGTTCCTGGACAATGTCACCACGGACATCTACCACTACGAGCCCAACAAGAAGCTG 2551 Query 279936 TCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 | | || ||| ||||||||| |||| || |||| || || || || |||| Sbjct 2552 GC-ATGCTACAAGGGCAACCTGGCTGCCTTTGTGGAGGTCCGTCCCGAAGCCAAGTCCTA 2610 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 ||| |||| | | ||| || | ||| | |||||| || || |||| || Sbjct 2611 CTACACCCTGTCTGCCTCCAACGTCCAGTTCAAGTTCCCTCCTCCGGGAATTCTCACAGG 2670 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 | ||| || || || || ||||| | | ||| || | | || ||||| Sbjct 2671 CGTCAAGTCGCAGACGCGAGCCATCATTCGCATGAGCAACGTGTCGTACACGTACCCCAA 2730 Query 280115 TGGCCCCAACATCTTCAGCAGT-----GTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 |||||||| | || || || ||| || ||| | ||| || || || | Sbjct 2731 -GGCCCCAAAGCCCTC-GCTGTCCGAGGTCTCCTGTCAGCTGTCTCTGTCTTCTCGTGTG 2788 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 | ||||||| ||||| |||||||| ||||| ||||| ||||| | || || || || Sbjct 2789 GCCATCATTGGGCCCAACGGTGCGGGCAAGTCCACCCTCATCAAGTTGCTCACCGGTGAA 2848 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 | | |||| || || ||||||||||||| |||| || | |||| || Sbjct 2849 AGCATCCCCACCACAGGCAAAGTCGAGAAGCATCCCAACCTGCGCATCGGTTACATCAAG 2908 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | ||| Sbjct 2909 CAGCACGCTCTGGAGCACGTGGAGATGCACCTTGAGAAGACCCCGAACCAGTACCTCCAG 2968 Query 280350 TGGCGCTATGC 280360 ||||| ||||| Sbjct 2969 TGGCGATATGC 2979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027356612955383