Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq26 176 8e-39 seq326 161 2e-34 seq433 120 6e-22 seq842 109 1e-18 seq752 98.7 2e-15 >seq26 Length=47302 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| ||||| || || ||| ||| || |||||||| || ||| | Sbjct 11970 CCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCAC 12029 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| ||| ||||| || ||| Sbjct 12030 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 12089 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 12090 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 12149 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 12150 TCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 12196 >seq326 Length=20000 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || ||||| || || ||||| || |||| Sbjct 12530 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 12589 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||||| || ||||| || ||| Sbjct 12590 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 12649 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||||||||| ||||| || ||||| || || | ||||| ||| Sbjct 12650 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACT 12709 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | ||||||||||| |||||||| Sbjct 12710 TCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 150 bits (166), Expect = 3e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || || |||||||| || ||| || || | || ||||||| |||||| ||||| || Sbjct 12338 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAA 12397 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || |||| ||| |||||||| || || || ||||| || |||||||| | ||||| | Sbjct 12398 ATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTG 12457 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 |||||||| || || ||||| |||||||||||||| || ||||| || | ||||||||| Sbjct 12458 TCGATGGTATCAGCAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACA 12517 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 12518 AAAATTTGCAT 12528 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | ||| | ||| || ||||| || || ||||| || || |||| | Sbjct 12758 CCACCACGGAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCG 12817 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | || || || || || ||| Sbjct 12818 AGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGA 12877 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || |||||||| | ||||| ||||||||||| | || || || Sbjct 12878 ATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACC 12937 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||||||||| ||||| || | |||||||| Sbjct 12938 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 12972 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || |||||||| || || | Sbjct 13059 CCACCTCGGAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 13118 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || |||||||| || Sbjct 13119 AGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGG 13178 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | |||||| || ||||| || | || || || Sbjct 13179 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACC 13238 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || ||||||||||||||||| || ||||| Sbjct 13239 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 13285 >seq433 Length=16792 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || ||| | || || | || || || | |||||| || ||||| || Sbjct 4879 TTCTGAATGTTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATC 4938 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || |||||||| ||||||||||| || || |||||||| ||| Sbjct 4939 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTCG 4998 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 4999 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 5057 >seq842 Length=9876 Score = 109 bits (120), Expect = 1e-18 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 |||||| |||||||||| ||||||||| |||||| | || ||||| |||| | || | Sbjct 2980 GGCATATCGCCACTGGAGGTACTGGTTCGGGGTCTTCTCAAGGTGCATCTCCACGTGCTC 2921 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | ||| ||||| | ||| | ||||||| ||||||||||||| || | || | Sbjct 2920 CAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTCGACTTTG-CCTG 2862 Query 225094 AGTCGGTTGTGC-CTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || ||| || |||||||| | ||||||||| || | |||||||||||| |||| Sbjct 2861 TGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCCCGCACCGTTGG 2802 Query 225153 GGCCAAT 225159 | ||||| Sbjct 2801 GCCCAAT 2795 >seq752 Length=11106 Score = 98.7 bits (108), Expect = 2e-15 Identities = 180/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 31350 GACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTCTTCCGCGAGTTCGCAAGAG 31409 || |||||||| |||| ||||||| | ||| || ||||||| || || || |||| Sbjct 4337 GAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAG 4396 Query 31410 GCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCG 31469 || || || || ||| || |||| ||||| | | |||||| | |||| || Sbjct 4397 GCTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCG 4456 Query 31470 TCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACA-CGTCCTGAAGACCCTGGACACCCAC 31528 ||| || || ||||||||||| ||||| | |||| ||||||||| ||||| || Sbjct 4457 GGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAAC 4515 Query 31529 TCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGAC 31588 || || || || | |||||||| || | ||||| ||| | ||| |||| Sbjct 4516 ACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGAC 4575 Query 31589 GTCAATGCTCTTGTCGAGGTT 31609 ||||||| |||||| |||||| Sbjct 4576 GTCAATGATCTTGTTGAGGTT 4596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921202336030360