Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq22247 147 5e-31 >seq22247 Length=250 Score = 147 bits (162), Expect = 5e-31 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 21187 CCTGTACCGCGTGGTGCAGCATCACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCT 21246 ||||||||||||||||||||||||||| || |||||| | || |||||| ||| |||| Sbjct 245 CCTGTACCGCGTGGTGCAGCATCACCTGGACGAGTTCATGCGGCAGTTCCGCTGGTCGCT 186 Query 21247 TATCAGCCGCGAGATGTTCAAGTGGCTGGACGATACGCCCGTCGAGACCCTGACCGATAT 21306 | ||||||| |||||| | |||||| || ||| || ||||| || || || Sbjct 185 CACCAGCCGCCAGATGTACGCCTGGCTGCGGGAAACGAGGCCAGACACCCTTACGGACAT 126 Query 21307 TCAGCGTGCTGCCCGGTTCTATTACCTGCAGCAGATGGGCTTCGGCGCCAAGATTACCGG 21366 ||||| || || || |||| ||||| ||| | | | |||||||| |||| | ||| Sbjct 125 CCAGCGGGCGGCGCGCTTCTTCTACCTCCAGAAACTCGCCTTCGGCGGCAAGGTGGACGG 66 Query 21367 CCGCACCTTTGGCACGGCCACCACTACGCCGCCAAAACTGAACCTGCTGCGCCTCGAGGA 21426 || |||| |||||| ||||||| | ||| ||||||||||||||||| | ||| Sbjct 65 CCAGACCTACGGCACGTCCACCACGGCCCCGATGCGCCTGAACCTGCTGCGCCTGGCGGA 6 Query 21427 G 21427 | Sbjct 5 G 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122055927118554