Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq752 306 7e-78 seq31 136 7e-27 >seq752 Length=11106 Score = 306 bits (338), Expect = 7e-78 Identities = 1110/1713 (65%), Gaps = 57/1713 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| |||||| | || |||| || | || |||||||||||| |||||| Sbjct 3767 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 3826 Query 243797 AGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 || || ||| |||| | | |||||| | || | ||| ||| || | | Sbjct 3827 AGACCCAACTT--CCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCAT----AG--TAG 3878 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | || | | | ||| | ||||| |||||| |||||||| |||| | || | Sbjct 3879 GATCCTTCATGT---GAACG---TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGAT 3932 Query 243915 CTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 | |||||||| ||| | | |||||| ||||| | | ||||| |||| | || Sbjct 3933 CGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCT 3992 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| || |||||| ||||||||| | || || || | | | |||| || Sbjct 3993 TGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGT 4052 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTG---T 244091 | |||| ||| ||| || |||| | | || ||| || || ||| | | Sbjct 4053 TCTTCATGGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGA---GGAGCCAGGGGT 4109 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | || ||||| || || || | || || ||||||||||| | |||| || |||| Sbjct 4110 TGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCT 4169 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 | | || ||| |||| ||||| || |||| || || || |||||||| | | || Sbjct 4170 CAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCA 4229 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||| ||| | | |||||| || ||| || || || || || ||| ||||| Sbjct 4230 GCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGA-CT-GTCCCACTCCCA 4287 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | || ||| |||| ||||||||| || || || | || | Sbjct 4288 TAACTCAGA-AGGC--------TTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA 4338 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTAC-AGCTC 244387 | |||| ||||| | |||| | |||||| || | || || |||||||| | || Sbjct 4339 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCAAGAGAGG 4397 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 ||| ||||| |||| ||||||||||||||||||| |||||| | || ||||||| | Sbjct 4398 CTGTC-AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCG 4456 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCACGCCGAT 244506 | |||||| |||| || | || ||| | |||| || || ||||| || || | Sbjct 4457 GGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAAC 4515 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 |||||||||| |||||| ||||| | || || | ||||||| |||| | Sbjct 4516 ACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGAC 4575 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||| || | |||||||||||| ||| || || | ||| ||| ||| ||| || Sbjct 4576 GTCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAA 4635 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||||| || | || | || || || || | ||||| | Sbjct 4636 GTCGTAGC----GGCCTTCT------TTGTAGTCG--ACGAAGGCAGGCAGGGCAAGAGA 4683 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| |||||| || || ||||| || | | ||||| | ||||| ||||| || Sbjct 4684 GGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 4743 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || ||||| ||||||| || || ||| ||| ||||||||| ||||| Sbjct 4744 GTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTT 4803 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| ||||| ||||| || || ||| ||||| |||||| | || |||||| | Sbjct 4804 GTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTT 4863 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | || | ||| |||| | |||||| ||| || ||| || ||||| Sbjct 4864 CTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTC 4923 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCC 244985 || || ||| || || | ||||| |||||| || ||| |||||||| ||| Sbjct 4924 AAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT-CGTTGGGACACATGAGGGTCC 4982 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| | | ||| | || ||||||||| || |||||||| || || |||||| Sbjct 4983 AATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGA 5042 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | | | | || ||| || |||||| | || || | |||||| || | Sbjct 5043 GGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACA 5102 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| ||||||| ||||| | ||||| || | || || || |||||||| || |||| Sbjct 5103 CGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCT 5162 Query 245166 GGTCCACCATCCTCTCGAGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 |||| || || | || | |||||||| ||| || | || | |||||||| || Sbjct 5163 GGTCAACGTATCTGGC-AGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGAT 5221 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCT 245284 ||||||||||| ||||| | ||| | | | || | | || | || ||| Sbjct 5222 GTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCG 5281 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | ||| || || ||||||||| | ||| ||| |||||| ||||| ||||| || Sbjct 5282 ATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCA 5341 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404 |||||||| |||||||| || || || ||||| |||||||| || |||| | | Sbjct 5342 ATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACACTGGGGGGTACCA 5401 Query 245405 GAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | |||||| || || || ||||||||| ||| Sbjct 5402 GCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 5434 >seq31 Length=45476 Score = 136 bits (150), Expect = 7e-27 Identities = 298/433 (69%), Gaps = 15/433 (3%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || | || || ||||||||||||||| || ||||| ||||| || |||| Sbjct 39649 TGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCT 39708 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || ||| | |||||| || ||||||||||| |||||||| ||| | | Sbjct 39709 GGCTCAAGAAGCGTGGTCT-GATGCCAGGTCTCACCTTCTCTAACGAACTTATCTCCCGT 39767 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAA 42883 || ||||| |||| | ||||||||||| || || |||| || |||| ||| | | Sbjct 39768 GATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCG---CATCTCAAGCACCGA 39824 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||| | ||| | ||| || || ||||| || || || | || ||| | ||||| Sbjct 39825 GCCAGC-AAGCAAGTTATCCAGGATATTATCACCGACGCTGTTGGCATTGAGCAAGAGTT 39883 Query 42944 CCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATG-TGCAAG 43001 | || || | || |||||| | || | ||||||||| | || ||| |||| Sbjct 39884 TTTGACCGAGGCTCT-TCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAA- 39941 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACA 43059 || || | | |||||||| | || || ||| | ||| | | |||| Sbjct 39942 TATATTGAATTTGTCGCCGATCGCCTATTGGTTGC--TCTTGGTAACGAAAAGGTATACA 39999 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 | || | ||||||||| || ||||| ||||| || |||| |||||||| ||||| | Sbjct 40000 AAACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAAGACAAACTTCT 40059 Query 43120 TCGAGAAGCGCGT 43132 |||||||||| || Sbjct 40060 TCGAGAAGCGAGT 40072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943908781996880