Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq39 95.1 1e-14 >seq39 Length=43498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 186/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 20378 TGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATT 20437 || |||||||| | |||||| | | ||| | ||||||||||| ||| ||||| Sbjct 5287 TGGCAGGGCGGCAACGCCATGAGGTGTAGATCCCGTGCGTTCCACGCACTCATGATGATC 5346 Query 20438 CTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCC 20497 | || |||| ||| || || || || || | | || | | ||||| | ||| Sbjct 5347 CGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAATCACGTCGGCGAGCTGGTCGACTCCC 5406 Query 20498 TGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAA 20557 | ||| || ||||| | | || || |||||| | || |||||||||| ||| ||||| Sbjct 5407 TTGCCGGTGTAGTCTGTCTTGGCATCGACGTACTCTGCGCCAAAGTGCCGCCATTGGAAG 5466 Query 20558 CCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAAC 20617 ||||| || ||||||| ||| || | | ||| | || || | | | |||||| Sbjct 5467 CCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTGTGAGACCCAGATTGTCGAGGAAC 5526 Query 20618 TCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 || | ||| ||||| ||||||||| ||||| || Sbjct 5527 TCGCGGGATCCATTGCCGTCCCATATTTTGACGCC 5561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441171627794920