Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_009382.1
Length=38760
Score E
Sequences producing significant alignments: (Bits) Value
seq22637 134 3e-27
>seq22637
Length=249
Score = 134 bits (148), Expect = 3e-27
Identities = 184/252 (73%), Gaps = 5/252 (2%)
Strand=Plus/Plus
Query 26710 GCCACGACGTGGAACAAGTCGTAGACCACCTCGGCCTGCGGGCAATGCGCGTTGATCTCC 26769
|| |||||||| |||| |||||| ||||| |||||||||||||||||| || | ||||
Sbjct 2 GCGACGACGTGAAACAGGTCGTACACCACTTCGGCCTGCGGGCAATGCTTCTTCACCTCC 61
Query 26770 AGTTCGTAGGCGGTCGTCATGTCGATTGCCACCGCCTCGATGCGCTGGGCAACGCCCTCC 26829
|| || | || || ||||||| || ||||||||||||| | | |||| || | ||
Sbjct 62 AGGTCAAAAGCCGTATTCATGTCCATAGCCACCGCCTCGA-CCTGTTGGCAGTGCTCGCC 120
Query 26830 GGAAGCTGTTCGAAGAAGGCGCGGGCAGTCTCGCGCGAGCGCCCCGGCCCGATCCAGAGC 26889
| ||| ||||||||| | |||| | ||| || | || |||| ||| |||
Sbjct 121 G--AGCAATTCGAAGAACGGGCGGATCGCCTCACGGCTGTTGCCATTGCCGACCCACAGC 178
Query 26890 ACCTGCCGGCCGATCGG-ATCAACGACCACCGTGGCATAGCGATGGCCTTTATGGAGTGC 26948
||| | | || |||| ||| | || ||||||||||||||||| || || || || ||
Sbjct 179 ACCCG-TGTTCGCTCGGCATCCATGATGACCGTGGCATAGCGATGCCCCTTGTGTAGGGC 237
Query 26949 GAACTCGTCCAT 26960
|||||| |||||
Sbjct 238 GAACTCATCCAT 249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123856747029132
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |