Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq22637 134 3e-27 >seq22637 Length=249 Score = 134 bits (148), Expect = 3e-27 Identities = 184/252 (73%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 26710 GCCACGACGTGGAACAAGTCGTAGACCACCTCGGCCTGCGGGCAATGCGCGTTGATCTCC 26769 || |||||||| |||| |||||| ||||| |||||||||||||||||| || | |||| Sbjct 2 GCGACGACGTGAAACAGGTCGTACACCACTTCGGCCTGCGGGCAATGCTTCTTCACCTCC 61 Query 26770 AGTTCGTAGGCGGTCGTCATGTCGATTGCCACCGCCTCGATGCGCTGGGCAACGCCCTCC 26829 || || | || || ||||||| || ||||||||||||| | | |||| || | || Sbjct 62 AGGTCAAAAGCCGTATTCATGTCCATAGCCACCGCCTCGA-CCTGTTGGCAGTGCTCGCC 120 Query 26830 GGAAGCTGTTCGAAGAAGGCGCGGGCAGTCTCGCGCGAGCGCCCCGGCCCGATCCAGAGC 26889 | ||| ||||||||| | |||| | ||| || | || |||| ||| ||| Sbjct 121 G--AGCAATTCGAAGAACGGGCGGATCGCCTCACGGCTGTTGCCATTGCCGACCCACAGC 178 Query 26890 ACCTGCCGGCCGATCGG-ATCAACGACCACCGTGGCATAGCGATGGCCTTTATGGAGTGC 26948 ||| | | || |||| ||| | || ||||||||||||||||| || || || || || Sbjct 179 ACCCG-TGTTCGCTCGGCATCCATGATGACCGTGGCATAGCGATGCCCCTTGTGTAGGGC 237 Query 26949 GAACTCGTCCAT 26960 |||||| ||||| Sbjct 238 GAACTCATCCAT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123856747029132