Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq752 304 2e-77 seq31 118 1e-21 seq9 91.5 2e-13 >seq752 Length=11106 Score = 304 bits (336), Expect = 2e-77 Identities = 1137/1768 (64%), Gaps = 25/1768 (1%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 3771 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 3830 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 3831 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 3890 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 3891 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 3950 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 ||| | || ||||| ||||| | ||||| ||| || || | ||||||| Sbjct 3951 CATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATAT 4010 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 113864 ||| || || ||||| ||| | | | ||| | | |||||| | | |||| Sbjct 4011 TGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACC 4070 Query 113865 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCG 113924 ||||||| || | |||||||| | ||| ||||| || || ||||| | Sbjct 4071 AGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAG 4130 Query 113925 CGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 113984 | | | || | | | || || |||| |||||||||||||||||||||||||||||||| Sbjct 4131 CCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCA 4190 Query 113985 AGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT 114044 ||||| | ||| || || ||||||||||| || | || | ||| || | ||| | Sbjct 4191 GAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGT 4250 Query 114045 TTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTG 114102 ||| | || | ||||| || |||||| || || | || | || | | Sbjct 4251 GCTCCTTGATCTGCTCCTTCAGACTGTCCCACTCCCATAACTCAGAA--GGCTTGACATT 4308 Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| || || || || ||||||| ||||| || || |||| || || ||| || Sbjct 4309 CCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGG 4368 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCTCAA 114221 ||| | | | |||| || || | || ||||| ||||| || || ||||| | Sbjct 4369 GCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCTCGA 4427 Query 114222 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATA 114280 | || | || | | ||||||| || || || | | || || | || | Sbjct 4428 AGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCAAGA 4486 Query 114281 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 114340 || | || || ||||| || ||||| | || || || ||||||| ||| || || Sbjct 4487 AAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTG 4546 Query 114341 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 114400 ||||| ||| | ||| ||| || || || | | | || || || | ||| Sbjct 4547 CGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTTACGGACGACC 4606 Query 114401 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GACATA 114459 || | |||| || || ||||| | | | || | | || ||| | | | ||| | Sbjct 4607 ACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGACGAA 4665 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 ||| ||||| | || |||| || || |||| |||||| || |||||| Sbjct 4666 GGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTC 4725 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 || || ||||| |||| || || || |||||| |||| |||||| || || ||| Sbjct 4726 AATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTT 4785 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 | |||| || ||||||||||| ||||| | || | ||||| || || ||||||| ||| Sbjct 4786 TCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTCGAG 4845 Query 114640 AATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698 || | | ||||| | || | ||| | | ||| | | | || ||||| ||| | Sbjct 4846 GATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCAT 4904 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 ||||| |||||| || ||||| || || || | || | || || || || | Sbjct 4905 ACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGT 4964 Query 114759 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGA 114818 || || | ||| | ||| | || || || || |||||||||||||| ||||||| Sbjct 4965 TGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGA 5024 Query 114819 TCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 114878 |||| ||||| |||||| || ||| ||| |||||| | || || || |||| Sbjct 5025 TCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCA 5084 Query 114879 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 114938 | || | |||||| | | || |||||||| || || ||||| | || | || || Sbjct 5085 AATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACC-- 5142 Query 114939 TACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCA 114992 | | || ||| |||||| || || || || ||| || || |||||||||| Sbjct 5143 -AGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCA 5201 Query 114993 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 115052 | |||||||| || | ||| || || || || ||| ||| | || | || Sbjct 5202 TGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCACGGA 5261 Query 115053 CATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 115112 |||| || || || || || || ||| ||| ||||| || || | ||| Sbjct 5262 TGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 5321 Query 115113 GACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACA 115172 || || ||||||| || || || ||| |||| | ||| ||||| ||| |||| Sbjct 5322 GAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA 5381 Query 115173 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT 115232 || | || ||||||||||||||||| || |||| |||||| ||| | | ||| Sbjct 5382 GCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTT 5439 Query 115233 G--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGAT 115290 | |||||| | |||||||||||| ||| ||| | || || |||||||| Sbjct 5440 GCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAAATACCGAC 5499 Query 115291 CGAGACCCGCATAAACATGTATTGGGGT 115318 || || ||||||| ||||| |||||| Sbjct 5500 CGCAACGCGCATAATCATGTGCTGGGGT 5527 >seq31 Length=45476 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 39794 GGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACC 39735 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| ||||| |||||||| | ||||||||||| ||| | ||| ||||||||| Sbjct 39734 TGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGAT 39675 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||||||| ||||| || | | |||| |||||| Sbjct 39674 GCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCAAAG 39635 >seq9 Length=58907 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAA 11015 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 54062 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 54007 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | ||||| |||||||||| ||||||||| ||||| ||||| ||||| | || || Sbjct 54006 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 53948 Query 11076 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | | | |||| | || ||||| ||| | |||||| || | |||||| || || || Sbjct 53947 CTACCGGACATGTAGAAAAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGCAGA 53888 Query 11135 GTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 ||||||||||| || || ||| | ||||| |||| | |||| | | ||||||| Sbjct 53887 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACC 53832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597081333696040