Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq26 122 9e-23 seq326 111 2e-19 seq433 96.9 4e-15 >seq26 Length=47302 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||||||||| ||||||||||| || || ||||| || ||| || || | Sbjct 11982 CGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGTGCGGCCA 12041 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||||||||| || || ||||| |||||||| | || | || ||||||| Sbjct 12042 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 12101 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 12102 TCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 12160 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || ||||| || || || || || || ||||| || Sbjct 12161 AGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 12199 >seq326 Length=20000 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| ||||| || |||| || |||||||| |||||||| Sbjct 13094 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAA 13153 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||||| || | | |||||| ||| ||| | || | |||| Sbjct 13154 GATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC-TGAATCTTCGACTTGACAT 13212 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || ||| || || |||| || ||||| ||||| || || ||||| | Sbjct 13213 TGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 13272 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 13273 CGAAGATTTGCAT 13285 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||||||| || |||||| ||||| ||||| || |||| ||| || | Sbjct 12541 ACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCGGCC 12600 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||||||||| || ||||||||||||||||| | || | || ||||| Sbjct 12601 ATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTT 12660 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | || | | | | || || ||||| || || | |||| Sbjct 12661 GT-CTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGA 12719 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || | ||||| || ||||| ||||| Sbjct 12720 TAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 102 bits (112), Expect = 9e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | ||| | ||| | |||||| || || ||||| || || ||||| || Sbjct 12300 GACCACCACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGC 12359 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||| || || |||| ||||||||||| || || || || ||||| |||||||||| | Sbjct 12360 TCAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAG 12419 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCC 42158 | | | |||||| ||| ||| | || | ||||| || | | || || ||||| Sbjct 12420 GGATTCCCTCCTTATCC-TGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCG 12478 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 12479 ACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 >seq433 Length=16792 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| ||||| ||||| || ||| || || |||| || |||||||| |||||||| | Sbjct 4877 CCTTCTGAATGTTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 4936 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 4937 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 4996 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 4997 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 5056 Query 42199 A 42199 | Sbjct 5057 A 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542965210395920