Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq22247 100 7e-17 >seq22247 Length=250 Score = 100 bits (110), Expect = 7e-17 Identities = 129/176 (73%), Gaps = 8/176 (5%) Strand=Plus/Minus Query 21457 TGTACCGGGTGGTGCAGCACCACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGG 21516 ||||||| ||||||||||| |||||||| |||||| |||| |||||| ||| |||| Sbjct 243 TGTACCGCGTGGTGCAGCATCACCTGGACGAGTTCATGCGGCAGTTCCGCTGGTCGCTCA 184 Query 21517 TCTCGCGTGAGATGTTCGCGTGG----GAGAAGCTCAAGCACACCGACACGCTAACGGAT 21572 | || |||||| ||| ||| | ||| | | || | ||||| || ||||| Sbjct 183 CCAGCCGCCAGATGTACGCCTGGCTGCGGGAAAC-GAGGC---CAGACACCCTTACGGAC 128 Query 21573 ATCCAGCGGGCCGCGCGGTTCTACTACCTGCAGCAGCAGGGGTTTGGCGGGAAGGT 21628 ||||||||||| ||||| |||| |||||| ||| | | | || ||||| ||||| Sbjct 127 ATCCAGCGGGCGGCGCGCTTCTTCTACCTCCAGAAACTCGCCTTCGGCGGCAAGGT 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125408075016042