Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq24664 98.7 4e-16 seq24920 84.2 9e-12 >seq24664 Length=239 Score = 98.7 bits (108), Expect = 4e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 6467 CCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGAGCGGTCTCCAGGAG-GACATC 6525 || ||||||| | | ||||| || |||||||| ||| || | || || ||||| Sbjct 5 CCATCGTCGAGCGCCTGGAACGCCTGGAGGAGGACAAGCA-GGCCGTCATGACCGACATG 63 Query 6526 AAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGATC 6585 ||||| |||| | | || || |||||| || | ||||||||||||| | || || || Sbjct 64 AAGGAGGTCTTCGCCGAGGCTAAGGGCGAGGGCTACGACGTCAAGATCCTGCGCAAGGTC 123 Query 6586 ATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTCGA 6641 |||||| | |||||| ||||||||| | || |||||| || ||| |||||||| Sbjct 124 ATCCGCATCCGGAAGCAGGACAAGGCGAAGCGCCAGGAAGAGGACGCGATCCTCGA 179 >seq24920 Length=238 Score = 84.2 bits (92), Expect = 9e-12 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 22316 ACGGTCGGCGCGGTCATGCTGCTGAAGGACGGCGACGGCCAGTACATCTGGCGTCCGGGC 22375 ||| ||| ||||||| |||||||||||||||| |||| | ||| | |||| ||| | Sbjct 59 ACGCTCGCCGCGGTCCGGCTGCTGAAGGACGGCAACGGGAACTACCTGTGGCAGCCGTCC 118 Query 22376 CTGGAGGCTGGCAAGCCGTCCACCCTGCTCGGCTCCCCGGTCTATCAGGCTGCGGACATG 22435 | || ||| ||||||| |||||| ||||| |||||| | | |||||||| Sbjct 119 TACGTCGCCGGCCAGCCGTCGACCCTGTGCGGCTACCCGGTGACGGAAGTGCCGGACATG 178 Query 22436 CCGGCGGTTGGCGCGGGCGCCCTGCCC-ATCGCCTTCGGCAACTTC-CGCGCCGGCTAC 22492 |||| || | ||| | || | ||||| ||| |||||| ||||| ||| ||||||| Sbjct 179 CCGGACGTGGCCGCCGCCG-CGTGCCCGATCCTGTTCGGCGACTTCAAGCG-CGGCTAC 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199265008693014