Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq752 242 4e-59 seq29927 100 3e-16 >seq752 Length=11106 Score = 242 bits (268), Expect = 4e-59 Identities = 1094/1713 (64%), Gaps = 48/1713 (3%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| |||||||||| || || || ||||| | | |||| | || | Sbjct 5592 TACTTTGGCTTCAAGACTCTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATTGTC 5533 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || || | |||||||| || |||| ||| || || | || | Sbjct 5532 GAGCGACCCCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAATATTGAG 5473 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 |||||| | | | | |||| |||| | ||| ||| | || || Sbjct 5472 CGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACA 5413 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962 || |||||||| || ||||| | ||| ||||||| |||||||| | ||| | || Sbjct 5412 CTCTTCAACGCTGGTACCCCCCAGTGTCAGCTGTCTTCCTGTTTCCTAGTCGAC-ATGAA 5354 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || |||| ||| || || | ||||| |||||| |||||| | ||||| || Sbjct 5353 GGACGACAGCATTGATGGCATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGAT 5294 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082 || || |||||||| | | |||||| | | ||||| | || || ||||| ||| Sbjct 5293 GGCTGGTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGG 5234 Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142 ||||| || || ||||||||| || | || ||||| || |||||||||||| | || | Sbjct 5233 CACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAG 5174 Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202 ||||| |||||||| ||| | | | ||| | || || |||| |||||||| || Sbjct 5173 ATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTG 5114 Query 94203 GCACGCGGACGTGCAGG-CTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA 94261 |||||| |||||| | ||||| | || |||||||||||||||| || || | Sbjct 5113 GCACGCAGACGTGTTCGACTTTCTT-GATTTGCGAAAGAACCACGGTAAGGAAGAAAATC 5055 Query 94262 GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGA 94321 | || | ||||||||| ||||| ||| | ||||| || || ||||| |||||||| | Sbjct 5054 GTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAA 4995 Query 94322 AAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTG 94381 | ||| | |||| || | |||||||| || || || || ||| | || ||| Sbjct 4994 AGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGA---TTG-C 4939 Query 94382 GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCG---------CAGGGCAAGGCCA 94432 || || || || || | |||| |||||| | ||||| | | Sbjct 4938 TATGGC-----GAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCC 4884 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| ||| ||| |||||| ||| | ||| | || ||| || |||| Sbjct 4883 GCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGG 4824 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | | |||| || ||| |||||| | |||| ||| ||||||| || |||| | Sbjct 4823 GCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGG 4764 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | || ||||| || |||||||| ||||| | ||||| | | || || ||| Sbjct 4763 GAACCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGG 4704 Query 94613 TTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGT 94672 ||||||| || ||| ||| ||| | |||| | | ||||| ||| ||||| Sbjct 4703 TTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGT-CGA-----CTACA--A 4652 Query 94673 CTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACC 94732 | || | | ||| | || |||| | || | | | | ||| |||| Sbjct 4651 AGAAGGCCGC-TACGACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACC 4593 Query 94733 TGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGA 94792 | |||| | | || ||| ||| |||||| | |||||| ||| ||| || Sbjct 4592 TCAACAAGATCATTGACGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGC 4533 Query 94793 AGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTC 94852 ||||| |||||||| | || || |||||| | || ||||| | | |||| Sbjct 4532 GACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTGCGCA 4473 Query 94853 TGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATT 94912 |||||| ||| ||| ||| || | | || | | || ||||| | ||| || Sbjct 4472 TGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACC 4413 Query 94913 ACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGT 94972 ||| ||| ||| | || | | |||||| | | | ||| || || | | Sbjct 4412 ACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGC---CCCTACTCTACCT 4356 Query 94973 TCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC 95029 || || || | ||| |||| || ||| |||| |||||| | ||| ||| |||| Sbjct 4355 TCAAGGGCTCTCCCGCCTCGGAA---GGTATTCTTCAATTCGACATGTGGAATGTCAAGC 4299 Query 95030 CCTCGGGTCTGTACGACTGGGA-AG-CTCTACGCGCTGATGTTATCAAACACGGTGTGAA 95087 | || | | | || ||||| || || | | || || | | | |||||| | Sbjct 4298 CTTCTGAGTTATGGGAGTGGGACAGTCTGAAGGAGCAGA--TCAAGGAGCACGGTATTCG 4241 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| || |||| | || ||||||||||| || || || |||| || || || ||||| Sbjct 4240 CAACTCGTTGCTGCTCGCTCCCATGCCCACCGCATCGACCTCGCAAATTCTGGGTAACAA 4181 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 |||| || || || | ||| |||||| | ||| | | || || | || || ||||| Sbjct 4180 TGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATT 4121 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACA 95266 || ||| ||||| ||||| ||| || | || | ||||| | ||| ||| Sbjct 4120 CCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGAC-ATGGGTCTCTGGTCTGATG 4062 Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326 | ||||||| | | || || || ||| | ||||||||||| | || || | Sbjct 4061 CCATGAAGAACCGCATCATTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATCCCCG 4002 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG-CGTGATACTCGAC 95385 ||||||||||| ||||| ||||| || |||||||| | ||||| | || || || | Sbjct 4001 CCGACATCAAGGCTCTCTATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTA-TCCAG 3943 Query 95386 CACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || |||| ||||| |||| ||| |||| Sbjct 3942 ATGGCCGCCGATCGCGGTGCCTTTATCGACCAG 3910 >seq29927 Length=230 Score = 100 bits (110), Expect = 3e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || |||||||| | | |||||| | | | ||| | || || |||| ||| Sbjct 8 GCTGGTGGAATCGGCTTGACCGTCCACCGCATCCTTGCTACCGGCTCTGACATTTCCGGA 67 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| || || ||||||||| || | || ||| | || |||||||||||| |||| | Sbjct 68 ACCAACGGTACATCCAACGGCATCCTGCCCATGATTCGCGTCTTCAACAACACGGCCAGA 127 Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 ||||| ||||||| ||| | | | |||| | | || |||| |||||| | ||| Sbjct 128 TACGTTAACCAGGGCGGTAACAAGCGACCGGGTGCAGTTGCCATCTACCTCGAGGCTTGG 187 Query 94204 CACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACG 94246 ||||| || ||| | ||||| | || ||||||||||||||| Sbjct 188 CACGCAGAGGTGTTCGACTTTC-TGGAGTTGCGAAAGAACCACG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494497711349480