Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq752 183 3e-41 seq26 113 4e-20 seq326 102 8e-17 >seq752 Length=11106 Score = 183 bits (202), Expect = 3e-41 Identities = 917/1442 (64%), Gaps = 33/1442 (2%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || || || ||||| || || | | || | ||| ||| | | Sbjct 4107 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 4166 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | || || || || || ||||| | || | |||||| |||||| || | Sbjct 4167 GCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGA 4226 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTG--CCAATC 153205 || ||| || || || | |||||| | || | ||||||| | ||| ||| || Sbjct 4227 GCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCA--GACTGTCCCACTC 4284 Query 153206 CCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCG 153263 ||| | | | || || | | |||||||||||| | || | | ||| ||| |||| Sbjct 4285 CCATAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGA--GGCG 4342 Query 153264 GGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG 153323 ||| ||| || ||| |||| ||| | || |||||| || || || || Sbjct 4343 GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGT 4401 Query 153324 -AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCG 153380 || || | | ||| ||||| ||| ||| || || ||||| |||| || || Sbjct 4402 CAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGA 4459 Query 153381 CTCTCGTACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCC 153439 |||| | ||||||||||| ||| | ||| ||||| || |||||||| | ||| || || Sbjct 4460 GACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACC 4518 Query 153440 GATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATC 153499 |||||||||||| | ||||||| | || | | ||||| || || ||| || Sbjct 4519 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTC 4578 Query 153500 GATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATC 153559 || || ||||||||||| || || ||||||| ||| | | | | || |||| ||| || Sbjct 4579 AATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTC 4638 Query 153560 ATAG-GTCAT--TTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACA 153616 ||| | | | || || | || ||| | | || ||||| ||| |||| || || Sbjct 4639 GTAGCGGCCTTCTTTGTAGTCG---ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCA 4695 Query 153617 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTT 153676 || || ||| || | | | | ||||| | |||||| | ||| |||||| || Sbjct 4696 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 4755 Query 153677 TATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTA 153736 ||| |||| || | ||| ||||| || | ||||| || || ||| | ||||| | Sbjct 4756 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 4815 Query 153737 CGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCAC 153796 || ||| || ||| || | |||| ||| | || | ||| || || | Sbjct 4816 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAAT 4875 Query 153797 CCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCC 153856 || || |||||||| | ||| || ||||| || |||||| || ||||| Sbjct 4876 AGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCC 4935 Query 153857 GTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGC 153916 ||||| || || ||||| || |||| | |||||||| || | ||| ||| || Sbjct 4936 ATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTT 4992 Query 153917 GTT---GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGC 153973 || |||||| |||||| ||||| || | ||| || || | ||||||||| || Sbjct 4993 CTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGC 5052 Query 153974 CTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTG 154033 || ||| || ||| | || || || | | | | ||| ||||| Sbjct 5053 ACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTG 5112 Query 154034 CCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTG 154090 ||| || || | ||||| ||| | ||||| ||| || |||||||| || |||| Sbjct 5113 CCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTA 5172 Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 | | | |||||||||||||| | |||||| | |||| | | || |||||||| Sbjct 5173 TCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGT 5232 Query 154151 CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GC 154209 || | |||| || || | | || ||||| | ||| || || || || Sbjct 5233 GCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGC 5292 Query 154210 CGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGT 154269 | | ||| || || || ||| || || ||||||||| || ||||| |||| Sbjct 5293 CAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATGCCATCAATGCTGTCGT 5351 Query 154270 CGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGA 154329 | | | ||| | |||||| ||| ||| || | | || || || |||| Sbjct 5352 CCTTCATGTCGACTAGGAAACAGGAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGA 5411 Query 154330 GGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGT 154389 | || || ||||| || || || || | ||| | | |||| || || | || Sbjct 5412 GTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGC 5471 Query 154390 CTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTT 154449 || |||| || || ||| |||| ||| |||||||| | ||||||||| || || | Sbjct 5472 GCTCAATATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCT 5531 Query 154450 CG 154451 || Sbjct 5532 CG 5533 >seq26 Length=47302 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||| || ||||| | | | |||||| || ||||||||||||| | Sbjct 11970 CCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCAC 12029 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || ||||| | | |||| || || || |||||||| || Sbjct 12030 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 12089 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 12090 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 12149 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| || ||||||||||| Sbjct 12150 TCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 12196 >seq326 Length=20000 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || ||||| | | |||||||| ||||||||||||||| | Sbjct 12530 CCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 12589 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || ||||| | | |||| || ||||| ||||| || || Sbjct 12590 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 12649 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | |||| | || | || || | || || || Sbjct 12650 ATGCCTTCCTTGTC-TTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGAC 12708 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || || |||||||| Sbjct 12709 TTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496036209801360