Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq22247 107 5e-19 >seq22247 Length=250 Score = 107 bits (118), Expect = 5e-19 Identities = 136/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 24964 CCTGTACCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCT 25023 |||||||||| |||| || |||||||| |||||| |||| |||||||||||| || Sbjct 245 CCTGTACCGCGTGGTGCAGCATCACCTGGACGAGTTCATGCGGCAGTTCCGCTGGTCGCT 186 Query 25024 GGTCTCGCGACAGATGTTCGAGTGGGCACAGATGGA---GCGCCCGGAGACGCTGACCGA 25080 | || ||||||| || ||| | | ||| | | || || || || || || Sbjct 185 CACCAGCCGCCAGATGTACGCCTGG---CTGCGGGAAACGAGGCCAGACACCCTTACGGA 129 Query 25081 CATCCAGCGCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCA 25140 ||||||||| || ||||| |||| |||||| || || || || ||||||||||||||| | Sbjct 128 CATCCAGCGGGCGGCGCGCTTCTTCTACCTCCAGAAACTCGCCTTCGGCGGCAAGGTGGA 69 Query 25141 GGGGCA 25146 || || Sbjct 68 CGGCCA 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128741031227094