Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_011613.1 Length=36632 Score E Sequences producing significant alignments: (Bits) Value seq23686 102 2e-17 >seq23686 Length=244 Score = 102 bits (112), Expect = 2e-17 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 15134 CGGGCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCAAGCACTACTCCACGGCCGACCT 15193 ||| ||| ||||||||||| ||||| ||| |||||||||||| ||| | |||||| Sbjct 182 CGGCCTGGGCCGCGTGCTGGTGTGGCCCTACTTGTTCAAGCACTTCTCGGTTGGCGACCT 123 Query 15194 GGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTACCCGCCCGGCAC 15253 ||| || | ||||| ||||||||||||||| | || |||| ||||| ||| | || Sbjct 122 GGCCGAGTTACTCGACATCTACGGTCTGCCGCTGCGCATCGGCAAGTATCCG--AGCAAC 65 Query 15254 GCC--CGACGAAGAGAAGGTGACCCTGCTGCGGGCCGTGACCGGCCTCGGCCATGCCGCA 15311 ||| | ||| || |||| || || ||| ||||| | ||| ||||||| ||| Sbjct 64 GCCAGCCCCGAGGAAAAGGCCACGCTCTGGCGCGCCGTCGCGGGCATCGGCCACAACGCC 5 Query 15312 GCAG 15315 |||| Sbjct 4 GCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117050095573164