Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq26 122 8e-23 seq752 120 3e-22 seq433 113 4e-20 seq326 104 2e-17 seq31 100 3e-16 >seq26 Length=47302 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||||||| | || ||| || || || ||||| |||| || ||||| | Sbjct 11982 CGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGTGCGGCCA 12041 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||| | ||| ||||| || || || |||||||||||| Sbjct 12042 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 12101 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| |||| |||||| | | ||| || || | ||| | Sbjct 12102 TCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 12160 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||||||||| Sbjct 12161 AGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 12196 >seq752 Length=11106 Score = 120 bits (132), Expect = 3e-22 Identities = 1101/1749 (63%), Gaps = 70/1749 (4%) Strand=Plus/Plus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTAT--CATGC 145909 || || || ||| ||| || || || | | | || ||||||||||| | || |||| Sbjct 3896 TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAACATG- 3954 Query 145910 ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT--GCTGGGGTATTTC 145967 || ||| ||| ||||| | || ||| ||||| |||||| || || ||| |||| Sbjct 3955 ACGCTGAGA-AATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATATTGG 4013 Query 145968 GTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTA 146027 | |||||||| | || ||||| ||||| | || ||| || | || | Sbjct 4014 GG--ATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCA 4071 Query 146028 AATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGC 146087 | || ||| ||||| |||||| ||| | ||||||| ||||| || || || || Sbjct 4072 GAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGC 4131 Query 146088 GAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAG 146147 | || || | | | || | |||| ||| | ||||| || |||| |||||||| || Sbjct 4132 CAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAG 4191 Query 146148 TATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 || |||| |||| ||||| |||||| || | |||||| ||||| | | ||||| Sbjct 4192 AATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTG 4251 Query 146208 -TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATAT 146266 || |||| ||| ||| || || ||| | ||| || | | | || | || || Sbjct 4252 CTCCTTGA-TCTGCTCCTTCAGACTGTCCCACTCCCATAACTCA---GAAGGCTTGACAT 4307 Query 146267 TGTAGTTGTCGTAATGCATAGTGCCG-CGGAACAGGGGGCTATTCTCGTACGATTCATAA 146325 | | ||||| | || | | | || | || ||| | || | | | || Sbjct 4308 TCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCC-CTTGAAGGTAGAGTAG 4366 Query 146326 GGACCGTCGATCTT-GGCCAGTTCGCAGCTAG-CTTCCAGAGCCGAAAAGTATATGGTCT 146383 || || | | |||| |||||| || || || || ||| || | ||| ||||||| Sbjct 4367 GGGCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCT 4424 Query 146384 CCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGC 146442 | |||| | ||||| |||| | |||||| ||| |||| || ||| Sbjct 4425 CGAAGATCTGCTTGTTGA-GCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGAGCA 4483 Query 146443 ACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTG 146502 | ||| ||||| || |||||||| | || ||||| | ||| || ||| | |||| ||| Sbjct 4484 AGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 4543 Query 146503 TTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACG 146562 || ||| || || |||| || |||||| ||| |||||||||||||| ||||| ||| Sbjct 4544 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTTACGGACG 4603 Query 146563 ACAATTTTCGTCAAACGATTCAG---CAGGACATAGTCAAATGTTTTAGTTTTAACGTTG 146619 || | || || | | || | ||| | || | | || || || || | Sbjct 4604 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT-AGCGGCCTTCTTTGTA--GTCG 4660 Query 146620 ACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAA 146679 ||| | | ||| | |||||||||||| || || ||| ||| || | | || Sbjct 4661 ACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAG 4720 Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| | ||||| | ||| |||||| || ||| | |||| || || ||||| Sbjct 4721 TACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTG 4780 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTC 146799 || ||||||||| |||||||| ||||| | || || |||||| | || | Sbjct 4781 CTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGAC 4840 Query 146800 TCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCT 146857 |||| |||| | | || | | ||||| | | | ||||| || || | | Sbjct 4841 TCGAGGATGGA--GTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCAC 4898 Query 146858 TTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGG 146915 || || || ||||| | ||||| || | || || || ||||| || Sbjct 4899 GCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCG--CCATAGCAATCAGCCAGGCCAGG 4956 Query 146916 ATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAA 146975 ||| |||||||| | || | ||| || |||| | ||||| | ||| || | Sbjct 4957 GCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAG 5016 Query 146976 ATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC---CTTGGCGTCCTCGGAGCCCAT 147032 ||| || ||||| || | || | | ||||||||| || | |||| || Sbjct 5017 ATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCT---TACCGTG 5073 Query 147033 GTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGC 147092 ||| || ||| | || | ||| | | || | ||||||||||| | ||| ||| Sbjct 5074 GTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGC 5133 Query 147093 GAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGAC 147149 | ||| || |||| ||||||||||| || |||| | | |||| |||||||| Sbjct 5134 AAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGAC 5193 Query 147150 TCGTAACATGGACACGAGGCCGCCGGATTT---TGTGGTGCCG---TTGTA------TTG 147197 || | ||||| | || |||| |||| | |||||||| |||| Sbjct 5194 GCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGT 5253 Query 147198 AGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA 147257 ||| | || || || ||| ||| |||| || || ||| || || |||| || | Sbjct 5254 AGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACA 5313 Query 147258 -CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAAC 147316 || || | || | ||||||||| || |||||||| ||||| ||| ||||||| Sbjct 5314 GGTCTTG-AGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAAC 5372 Query 147317 ACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGA 147376 | ||| ||| || | || || || || || || || |||||| |||| Sbjct 5373 AGGAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA 5432 Query 147377 A---CGTGCCCAGACTCATCAATTGATACGTTTC--AATGGCGCTC-ATAACGTCATCGC 147430 | | || | || ||| | || || || || || |||||| ||| ||| || | Sbjct 5433 AGAGCTTG-CTGGA--CATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTC-TCCC 5488 Query 147431 CGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCAT 147490 | ||| | | || |||||||| | ||||||||||||||| || ||||| | | | Sbjct 5489 C--AAATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 5546 Query 147491 TGACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGT 147550 ||| ||| | |||||| | |||||| ||||| |||||||| | |||| | ||| Sbjct 5547 TGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGT 5606 Query 147551 CCCTGTTGT 147559 | |||| || Sbjct 5607 CTCTGTCGT 5615 >seq433 Length=16792 Score = 113 bits (124), Expect = 4e-20 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| |||| || || ||| || || ||||| || |||||| | ||| Sbjct 4879 TTCTGAATGTTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATC 4938 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || |||||||||||||| |||||| ||||| | ||| Sbjct 4939 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTCG 4998 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 4999 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAAA 5058 Query 127106 ATCTGCATGGCTTATT 127121 ||| |||| |||| Sbjct 5059 --CTGGATGGTGTATT 5072 >seq326 Length=20000 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || |||||||| ||| | | || ||| ||| || ||||| || ||| Sbjct 12788 GTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCCAGCTGCTTACCA 12847 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||||||||| ||||| || || ||||| ||| || ||| ||| Sbjct 12848 GCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCGATTTG 12907 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || || |||| ||| Sbjct 12908 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTC 12967 Query 127097 TTTACAA 127103 || |||| Sbjct 12968 TTGACAA 12974 >seq31 Length=45476 Score = 100 bits (110), Expect = 3e-16 Identities = 301/457 (66%), Gaps = 17/457 (4%) Strand=Plus/Plus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||| | || ||| | |||||||| || |||||| |||||||| || |||||| Sbjct 39639 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCC 39698 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 |||| || | | || | || | ||||| || ||||| || ||||| || Sbjct 39699 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAACTT 39758 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCT---ACTA-CAACACTAG 47308 ||||| | || || || ||||||| ||||||||||||| | ||| || | | || Sbjct 39759 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCTCAAG 39818 Query 47309 AGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCC 47366 ||| | | ||| | || | ||| || || | |||| || || | | Sbjct 39819 CACCGAGCCAGCAAGC---AAGTTATC-----CAG-GATATTATCACCGACGCTGTTGGC 39869 Query 47367 ATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAG 47426 |||||| |||||||| |||||||||| || || | | || |||||||| Sbjct 39870 ATTGAGCAAGAGTTTTTGACCGAGGCTCTTCCGTGTGCTCTCCTAGGCATGAACGCCACA 39929 Query 47427 ATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC 47486 | |||| | || || |||||||||||||| ||||| | ||| || ||| | Sbjct 39930 CTAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCTTG-GTAACGA 39988 Query 47487 AA-GATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47545 || | | ||| | |||| || || ||||| || ||| | |||||||| | | ||||| Sbjct 39989 AAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGGGTGGCAA 40048 Query 47546 GACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAA 47582 ||| ||||| ||||||||||| || || |||||| || Sbjct 40049 GACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAA 40085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475284072679120