Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq22247 168 2e-37 >seq22247 Length=250 Score = 168 bits (186), Expect = 2e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35497 CCTGTATCGCGTCGTTCAGCATCACCTCGAGGAATTCGTGCGGCAGTTCAAATGGGCGCT 35556 |||||| ||||| || ||||||||||| || || ||| ||||||||||| ||| |||| Sbjct 245 CCTGTACCGCGTGGTGCAGCATCACCTGGACGAGTTCATGCGGCAGTTCCGCTGGTCGCT 186 Query 35557 CACCAGTCGGCAGGTGTTCGAGTGGCTGAAGCAGACGGCGCCGGAAACGCTCACCGACAT 35616 |||||| || ||| ||| || |||||| | | ||| ||| || || || || ||||| Sbjct 185 CACCAGCCGCCAGATGTACGCCTGGCTGCGGGAAACGAGGCCAGACACCCTTACGGACAT 126 Query 35617 CCAGCGTGCGGCGCGGTTCTACTATCTGCAGAAAAACTGCTTTGGCGGGATTGTCCACGG 35676 |||||| |||||||| |||| ||| || |||||| | ||| ||||| | || |||| Sbjct 125 CCAGCGGGCGGCGCGCTTCTTCTACCTCCAGAAACTCGCCTTCGGCGGCAAGGTGGACGG 66 Query 35677 GCAGACGTTCGGCACGGCTACCACTGCGCCGCCGGGTCTGAACTTGCTGCG 35727 ||||| | ||||||| | ||||| || ||| | | |||||| ||||||| Sbjct 65 CCAGACCTACGGCACGTCCACCACGGCCCCGATGCGCCTGAACCTGCTGCG 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127490372994348