Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq752 300 2e-76 seq31 122 1e-22 seq9 89.7 6e-13 >seq752 Length=11106 Score = 300 bits (332), Expect = 2e-76 Identities = 1142/1772 (64%), Gaps = 33/1772 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 3771 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 3830 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 3831 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 3890 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | ||| | ||||| || ||||| ||| || ||||| || ||||| | || | Sbjct 3891 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCGGCCATCTGGATAA 3950 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 ||| | || ||||| ||||| | ||||| ||| || || | ||||||| Sbjct 3951 CATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCGGCGGGGATAT 4010 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| || || || || ||| || | | |||| | | |||||| | | | Sbjct 4011 TGGGGATGTTCTGAATGGAACCATT---CTCGGCAATGATGCGGTTCTTCATGGCATCAG 4067 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 4068 ACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 4127 Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 | || | | || | | | || ||||||| ||||||||||||||||||||||||||||| Sbjct 4128 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 4187 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 ||| ||||| | || || || ||||||||||| || | || | |||||| | || Sbjct 4188 CCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 4247 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCC 116060 | | || | || | ||||| || |||||| || || | || | || | Sbjct 4248 CGTGCTCCTTGATCTGCTCCTTCAGACTGTCCCACTCCCATAACTCAGAA--GGCTTGAC 4305 Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 | |||||| || || || || ||||||| || || || || |||| || || || Sbjct 4306 ATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 4365 Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 116179 ||||| | | | |||| || || | || ||||| ||||| || || |||| Sbjct 4366 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCT 4424 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-A 116238 | || || | || | | ||||||| || || || | | || || | | Sbjct 4425 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 4483 Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 4484 AGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 4543 Query 116299 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 || ||||| ||| | ||| ||| || || || | | | || || || | | Sbjct 4544 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTTACGGACG 4603 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 116417 || || | |||| || || ||||| | | | || | | || ||| | | | ||| Sbjct 4604 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 4662 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | ||| ||||| | || |||| || || |||| |||||| || ||| Sbjct 4663 GAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 4722 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 ||| || || ||||| |||| || || || |||||| |||| |||||| || || Sbjct 4723 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 4782 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 |||| |||| || ||||||||||| |||||| | || | ||||| || || ||||||| Sbjct 4783 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGACTC 4842 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 116656 ||| || | | ||| | | || | ||| | | ||| | | | || ||||| || Sbjct 4843 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 4901 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCC 116715 | |||||| |||||| |||||||| || || ||| ||| || | || || || | Sbjct 4902 CATACTTTTCGTAGAGAGCCTCAAATTCCTC-GCCATAGCAATCAGCCAGGCCAGGGCAC 4960 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | ||||| | ||| | ||| | || || || || |||||||||||||| ||| Sbjct 4961 TCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCT 5020 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 |||||||| || || |||||| || ||| ||| |||||| | || || || Sbjct 5021 GGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTT 5080 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-A 116894 ||||| || | |||||| | | || |||||||| || || ||||| | || | || | Sbjct 5081 CGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCA 5140 Query 116895 C-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | | |||| ||| |||||| || || || || || ||| || |||||| Sbjct 5141 CCAGGTCGCTTG---TTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGA 5197 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT 117009 ||||| |||||||| || | ||| || || || || ||| ||| | | || Sbjct 5198 AGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTAGCA 5257 Query 117010 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCC 117069 | || ||||| || || || || || || ||| ||| ||||| || || | Sbjct 5258 CGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAGGTC 5317 Query 117070 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 117129 ||||| || ||||||| ||||| || ||| |||| | ||| ||||| ||| Sbjct 5318 TTGAGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAGGAA 5377 Query 117130 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 117189 |||| || | || ||||||||||||||||| || |||| |||||| ||| | | Sbjct 5378 GACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGA 5435 Query 117190 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247 |||| |||||| | |||||||||||| || ||| | || || ||||| Sbjct 5436 GCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAAATAC 5495 Query 117248 CGATTGAGACCCGCATAAACATGTATTGGGGT 117279 ||| | || ||||||| ||||| |||||| Sbjct 5496 CGACCGCAACGCGCATAATCATGTGCTGGGGT 5527 >seq31 Length=45476 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| |||||| Sbjct 39793 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACCT 39734 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 39733 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 39674 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA--CTTTGT-ATCA 127696 ||||||||| ||||| || | | |||| ||||| ||| ||| | |||| | | Sbjct 39673 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCAA---AGCTGGAATCCTTGTCCTGA 39617 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | ||| || ||||| | ||| ||||| ||| || ||||| Sbjct 39616 ATCCAACGAATGGCCCAGTCTGCTTTTTTTCGGATGCAAGGGAC 39573 >seq9 Length=58907 Score = 89.7 bits (98), Expect = 6e-13 Identities = 223/333 (67%), Gaps = 12/333 (4%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAA 12930 ||| | ||| || | |||||| ||||||| ||| | || ||| ||| |||| Sbjct 54062 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAAGGCGACTTGGCTTT----GGCAG 54007 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 54006 CACTAAAGAGCTCTCGGACTCGCTTGGCACCTACACCGACAAAGATTTCGTCGAA-TTCA 53948 Query 12991 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | | | |||| | || ||||| ||| | |||||| || | |||||| || || || Sbjct 53947 CTACCGGACATGTAGAAAAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGCAGA 53888 Query 13050 GTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCACT 13108 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||||| Sbjct 53887 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACCCAA 53829 Query 13109 TCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGC 13168 | || || ||||| | || ||||| || || | ||| | | || ||||| || Sbjct 53828 GTCGGAGAAGTTTTCGGGGTTCTTGAGAAACTCGACCACTTCCTGTAGCTCTTCCTTGGC 53769 Query 13169 GGCGTCGATGCCTTCAACGTCACTGAAGCGTGT 13201 | ||| || | ||||| ||||| || || Sbjct 53768 CTCATCGCAACCGTGCACGTCGCTGAATCGGGT 53736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613227571087080