Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq752 114 2e-20 >seq752 Length=11106 Score = 114 bits (126), Expect = 2e-20 Identities = 439/676 (65%), Gaps = 10/676 (1%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 3764 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 3821 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 3822 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 3881 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||||| ||| || |||||| |||||||| |||||| || ||||| |||||| Sbjct 3882 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGAT-AAAGGCACCGCGATCGGCGGCC 3940 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | ||||| ||| ||||||||||| || ||||| | | | || ||| Sbjct 3941 ATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCG 4000 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | || | | || ||| || || || || ||||| || | | || || | Sbjct 4001 GCGGGGATAT-TGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCAT 4059 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||| | |||| || || ||| | || |||||||| || ||| Sbjct 4060 GGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTG 4119 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 4120 GAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTC 4179 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||| || | ||| || | ||| || |||||||||||||| || |||| ||||| Sbjct 4180 ATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTT 4239 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGG 204377 ||| | ||||| | | || |||| ||||||| | ||| || | | || | Sbjct 4240 GCGAATACCGTGCTCCTTGA-TCTGCTCCTTCAGACTGTCCCACTCCCATAACTCAGAAG 4298 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || |||||||||||| |||| || |||| | | || ||||||| | | Sbjct 4299 GCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGG 4358 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACA 204497 | | || || | ||||| ||||||| ||||| | || ||| | ||| | Sbjct 4359 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAGA 4418 Query 204498 TGGTCTCAAAGATCTG 204513 ||||||| |||||||| Sbjct 4419 TGGTCTCGAAGATCTG 4434 Score = 100 bits (110), Expect = 5e-16 Identities = 415/639 (65%), Gaps = 18/639 (3%) Strand=Plus/Plus Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCT--GATCGTCTTTCACCCTC 205165 ||| || || || | ||||||||||| || | ||| ||| | || | || || | | Sbjct 4948 CAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA-ATCCCCGTTCTT-TTCGACGCGC 5005 Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCG 205225 | ||| || || || ||||||||| | || || || || || | | || | || Sbjct 5006 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCC 5065 Query 205226 TCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAA 205284 | || |||||||| ||| || || ||| || | | ||| |||||||| ||||| | Sbjct 5066 TTACCGTGGTTCTTTCGCAAATCAAGA-AAGTCGAACACGTCTGCGTGCCAAGGCTCGAG 5124 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCA---TGCGAGTCAT 205341 | | ||| | ||| || || | |||||| || |||||||| || || ||| | Sbjct 5125 GTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTT 5184 Query 205342 CGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGAT 205401 |||||| || || ||||| || | | ||||||| || ||||| |||| | || Sbjct 5185 ---GTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAAT 5241 Query 205402 GGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 | ||||| ||| | | | | || | | ||| || || |||| ||||| Sbjct 5242 GTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGA 5301 Query 205462 GATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 |||| ||| || ||||| |||||| ||||||||| | ||| |||||| || || Sbjct 5302 GATCATGGCACAGGTCTTG-AGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCA-TG 5359 Query 205521 TC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGG-TGCCCGCGTGGAAGAGCGTGGG 205578 || || || | || |||| ||||| | || | || | || |||| |||||| || || Sbjct 5360 TCGACTAGGAAACAGGAAGACAGCT-GACACTGGGGGGTACCAGCGTTGAAGAGTGTAGG 5418 Query 205579 GCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAG 205638 ||||||| ||||| |||| | || ||||||||||| |||| ||| | Sbjct 5419 TGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAAT 5478 Query 205639 ATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCAC 205698 || | || |||||| | || | | ||| | | ||| || |||| ||| | | Sbjct 5479 ATTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAAT 5538 Query 205699 CCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 | | |||| | ||||| ||||| | |||||| || || Sbjct 5539 CTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGT 5577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794792778199280