Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq26 134 2e-26 seq326 113 5e-20 seq433 111 2e-19 >seq26 Length=47302 Score = 134 bits (148), Expect = 2e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| || |||||||| ||||| ||||||||| | || ||||| | Sbjct 11982 CGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGTGCGGCCA 12041 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || || || || | || |||||||| | || | || ||||||| Sbjct 12042 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 12101 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 12102 TCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 12160 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || ||||| || || || ||||| |||| Sbjct 12161 AGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGC 12201 >seq326 Length=20000 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | |||||||| |||| || |||||||| || ||||| Sbjct 13094 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAA 13153 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||||| || | | |||||| ||| |||||| ||||| | Sbjct 13154 GATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCCTGAATCTTCGACTTGACATT 13213 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||| || || || | || ||||| ||||| || || || || || Sbjct 13214 GTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 13273 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 13274 GAAGATTTGCAT 13285 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||||| ||| |||||| || || |||||||||| | ||| || | Sbjct 12541 ACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCGGCC 12600 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| || || || || | ||||||||||| | || | || ||||| Sbjct 12601 ATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTT 12660 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||| | | | | || || ||||| || |||| ||||| Sbjct 12661 GTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGAT 12720 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || || ||||| ||||| Sbjct 12721 AGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||||| || || || | || || |||||||| || ||||| Sbjct 12794 TCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAG 12853 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | | ||||| ||| |||||| |||| | Sbjct 12854 ATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCGATTTGACATTG 12913 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | |||||||| || || |||| || || ||| Sbjct 12914 TCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACA 12973 Query 46583 A 46583 | Sbjct 12974 A 12974 >seq433 Length=16792 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || ||||||||| | || || || |||| || ||||||||||| ||||| | Sbjct 4877 CCTTCTGAATGTTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 4936 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | || ||||||||| ||| || ||||| | Sbjct 4937 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 4996 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| ||||||||||| || ||||| | Sbjct 4997 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 5056 Query 46584 A 46584 | Sbjct 5057 A 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564980771402760