Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq31 149 6e-31 seq26 143 3e-29 seq433 114 1e-20 seq326 102 8e-17 >seq31 Length=45476 Score = 149 bits (164), Expect = 6e-31 Identities = 362/536 (68%), Gaps = 22/536 (4%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| ||||||||||| || || ||||| || || || || || || | Sbjct 40100 CATGACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACC 40041 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 |||||||||| ||| ||||| ||||||||||| || ||||| ||| || | Sbjct 40040 CAAGGAAATGTTTTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACC 39981 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCA 132767 | || | || | || | ||||| || || || || |||||| ||| || | || Sbjct 39980 AAGAG--CAACCAATAGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCG 39923 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 | | | || || ||| |||| ||| || || ||||| | ||| |||||| ||| | | Sbjct 39922 TTCATG-CCTAGGAGA-GCACACGGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAA 39865 Query 132827 CCGCGTCGGTGACGATTTCCC---TAACGCGC--GCCGCGCTCGGCCGTTGCACCAAATG 132881 | |||||||||| || ||| |||| || || | |||||| ||| | ||| Sbjct 39864 CAGCGTCGGTGATAATATCCTGGATAACTTGCTTGCTG-GCTCGGTGCTTG----AGATG 39810 Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 | | || || || |||||||| ||||| ||||| || | ||| || |||||||| Sbjct 39809 CGAGTGCAACAGACAGGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTT 39750 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 ||| || | || ||||| || || || || |||||||| || || | ||| || Sbjct 39749 AGAGAAGGTGAGACCTGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGC 39690 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || ||||||| |||||| || || ||||||||||||| ||||| | | || ||| Sbjct 39689 ACCGCTGAAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCAAAGCTGGA 39630 Query 133062 TTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || ||| ||| ||||| || | ||||| || || |||| | || ||| || Sbjct 39629 ATCCTTGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTTTTCGGATGCAAGG 39576 >seq26 Length=47302 Score = 143 bits (158), Expect = 3e-29 Identities = 174/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 12199 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCT 12140 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || | || |||| ||||| ||||| |||||| | || Sbjct 12139 TCCGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 12081 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | || || || ||||| || || | |||||||| |||||| Sbjct 12080 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGTGCGACTA 12021 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| ||| || ||||||||||||||||| || | ||||| Sbjct 12020 CAACATCCAGAAGGAGAGC-ACCCTGCATTTGGTGCTGCGCCTGCGTGGCGG 11970 >seq433 Length=16792 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 5057 TTCGTTAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 4998 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || | ||||||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 4997 GACAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 4938 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| ||||| || |||| || ||||| |||||||||||| || ||| Sbjct 4937 ATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTGCGACTACAACATTCAGAAG 4878 Query 38433 G 38433 | Sbjct 4877 G 4877 >seq326 Length=20000 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| || |||| |||||| | | Sbjct 13285 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 13226 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | || || |||||||| ||| ||||||| Sbjct 13225 GATACCATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCCCCCGACCAG 13166 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 13165 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGCACTCTTGCTGACTACAAC 13106 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 13105 ATCCAGAAGGA 13095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || || |||||| | || ||||| | | Sbjct 12528 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTGCT 12469 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | || | ||| || || | || || |||||||| || ||||||| Sbjct 12468 GATACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 12409 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || ||||| || |||| ||||| || | |||||||||| Sbjct 12408 CAACGACTTATTTTTGCCGGAAAGCAGCTAGAAGACGGCCGCACGCTGAGCGACTACAAC 12349 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| || ||||| | ||||| ||| || | || || Sbjct 12348 ATCCAGAAGGAAAGTACTTTGCATCTCGTGCTTCGTCTGCGTGGTGG 12302 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | || ||||| | | Sbjct 12756 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 12697 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || || | ||||| || || |||||| | ||||| Sbjct 12696 GATACAATCGATAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 12637 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || || ||||| || || | || || | |||||||||| Sbjct 12636 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGGCCGACTACAAC 12577 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || ||||||||||| |||||| || | || || Sbjct 12576 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGGGGTGG 12530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499944827489920