Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq23831 149 2e-30 seq326 100 1e-15 >seq23831 Length=243 Score = 149 bits (164), Expect = 2e-30 Identities = 184/248 (74%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 |||| |||| ||||| ||||||||||| || || || || || |||||||| ||||| || Sbjct 1 AGTTTCTGAAGCAGTTATTACTGTTCCAGCATACTTTAACGACGCACAACGTCAAGCTAC 60 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||| ||||| | ||||| |||||||| || | || || || ||||| |||||||| Sbjct 61 AAAAGAAGCAGGTGAAATTGCAGGTTTAAAAGTAATGCGTATCATCAATGAGCCTACAGC 120 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 ||| ||| |||| |||||| ||| ||| || ||| |||| |||| || || Sbjct 121 AGCAGCTTTAGCTTATGGATTAGACAAA--CAAGGAA----AAGACCAAAAAATCGCAGG 174 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT-GAAGATGGGGTAT 451550 | ||||| |||||||| ||| ||||| |||| | ||| |||| | || || || | Sbjct 175 TTACGATTTAGGTGGAGGTACTTTTGATATTTCTAT-CTTAGAATTAGGTGACGGAGTTT 233 Query 451551 TTGAAGTA 451558 |||||||| Sbjct 234 TTGAAGTA 241 >seq326 Length=20000 Score = 100 bits (110), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 ||||||| || || || || ||||| || || || || || | ||| || | | ||| Sbjct 12962 TGACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAAT 12903 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || ||||| ||||||||||| |||||||||||||| || || || || ||| | || | Sbjct 12902 CGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATCTTCGCTGGTA 12843 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 | || || |||||||| | || | || || || ||||| | ||||| | || |||| Sbjct 12842 AGCAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGGAATCCACTCTTC 12783 Query 391252 ACTTAGTA 391259 || | ||| Sbjct 12782 ACCTTGTA 12775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974795379556004